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BaseInfo

ncRNA ID	novel_zma_miR6508
Species	Zea mays
Class	miRNA
Genome position	Chr9:9386141-9386219 [-]
Reference genome	RefGen_v4
Source	SRR1618883
Length	22
Mature sequence(if miRNA)	1 - AGCUCUUUGCCGAGUGUCAACC - 22
Stem-loop(if miRNA)	--AC              -C  C              UAC     GACACUCGGCAAAG  CU CUUUGCCGAGUGCC   C     ||||||||||||||  || ||||||||||||||     CUGUGAGCCGUUUC  GA GAAACGGCUCACGG   A CCAA              UC  A              UUU
Stem-loop sequence	ACGACACUCGGCAAAGCCUCCUUUGCCGAGUGCCUACCAUUUGGCACUCGGCAAAGAAGCUCUUUGCCGAGUGUCAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406693.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   **|||||||||||||||||||| targets:48   UUUUGACACUCGGCAAAGAGCU   69 Target Full Sequence	0.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|*||||||||||||||||| targets:88   AUAUAACACUCGGCAAAGAGCU   109 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   **|||||||||||||||||||| targets:48   UUUUGACACUCGGCAAAGAGCU   69 Target Full Sequence	0.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|*||||||||||||||||| targets:88   AUAUAACACUCGGCAAAGAGCU   109 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   **|||||||||||||||||||| targets:48   UUUUGACACUCGGCAAAGAGCU   69 Target Full Sequence	0.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|*||||||||||||||||| targets:88   AUAUAACACUCGGCAAAGAGCU   109 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
BT054268.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|||||||||*||||||||* targets:2008   UUGUGACACUCGCCAAAGAGCC   2029 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|||||*||||||||||||* targets:2202   AUAUGACAAUCGGCAAAGAGCC   2223 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|||||||||*||||||||* targets:2008   UUGUGACACUCGCCAAAGAGCC   2029 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|||||*||||||||||||* targets:2202   AUAUGACAAUCGGCAAAGAGCC   2223 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT063684.1	ncRNA:22   CCAACUGUGAGCCGUUUCUC-GA   1   |**|||||||||||||||||-|| targets:1269   GACUGACACUCGGCAAAGAGGCU   1291 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0094N19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175015.1	ncRNA:22   CCAACUGUGAGCCGUUUCUC-GA   1   |**|||||||||||||||||-|| targets:1269   GACUGACACUCGGCAAAGAGGCU   1291 Target Full Sequence	3.0	Zea mays uncharacterized LOC100382263 (LOC100382263), mRNA	NA	coding protein	psRNATarget
JB169026.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   *|*||=||||||||||||||*| targets:27   CGCUGGCACUCGGCAAAGAGGU   48 Target Full Sequence	2.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
JB169026.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   *****||||||||||||||||* targets:68   ACAGAACACUCGGCAAAGAGCC   89 Target Full Sequence	3.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   *|*||=||||||||||||||*| targets:27   CGCUGGCACUCGGCAAAGAGGU   48 Target Full Sequence	2.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   *****||||||||||||||||* targets:68   ACAGAACACUCGGCAAAGAGCC   89 Target Full Sequence	3.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   *|*||=||||||||||||||*| targets:27   CGCUGGCACUCGGCAAAGAGGU   48 Target Full Sequence	2.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
HI408565.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   *****||||||||||||||||* targets:68   ACAGAACACUCGGCAAAGAGCC   89 Target Full Sequence	3.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008665669.2	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   **|*||||||||||||||||*| targets:2125   AAUGGACACUCGGCAAAGAGAU   2146 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642387 (LOC103642387), mRNA	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|||||*||||||||||||* targets:183   AUAUGACAAUCGGCAAAGAGCC   204 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:22   CCAACUGUGAGCCGUUUCUCGA   1   ***|||||*||||||||||||* targets:183   AUAUGACAAUCGGCAAAGAGCC   204 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget