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BaseInfo

ncRNA ID	novel_zma_miR6501
Species	Zea mays
Class	miRNA
Genome position	Chr5:142249151-142249265 [-]
Reference genome	RefGen_v4
Source	SRR2647386
Length	24
Mature sequence(if miRNA)	92 - UUGAUUUGGUGACAAGGGGAUCCU - 115
Stem-loop(if miRNA)	--             AAG                               U      AA   UUGAUUUGGUGAC   GGGAUCCUGGGAGGAUUGGAGGGGAUUGAGG GGAAAU  A   |||||||||||||   ||||||||||||||||||||||||||||||| ||||||   GACUAAACCACUG   CCCUAGGGCCCUCCUAACCUCCCCUAACUCC CCUUUA  C CC             -GG                               C      AU
Stem-loop sequence	UUGAUUUGGUGACAAGGGGAUCCUGGGAGGAUUGGAGGGGAUUGAGGUGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCCGGGAUCCCGGGUCACCAAAUCAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ098881.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||| targets:104   GGGAUCCCCUUGUCACCAAAUCAA   127 Target Full Sequence	0.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU973567.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||| targets:112   GGGAUCCCCUUGUCACCAAAUCAA   135 Target Full Sequence	0.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||| targets:1497   GGGAUCCCCUUGUCACCAAAUCAA   1520 Target Full Sequence	0.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	1.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	1.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:94   GGGAUCCCCUUGUCACCAAAUCAG   117 Target Full Sequence	1.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:848   GGGAUCCCCUUGUCACCAAAUCAG   871 Target Full Sequence	1.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:887   GGGAUCCCCUUGUCACCAAAUCAG   910 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:892   GGGAUCCCCUUGUCACCAAAUCAG   915 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =||||||||||||||||||||||= targets:892   GGGAUCCCCUUGUCACCAAAUCAG   915 Target Full Sequence	1.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||||||||||||||||||| targets:298   GUGAUCCCCUUGUCACCAAAUCAA   321 Target Full Sequence	0.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EZ082583.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||=|||||||=|||||||| targets:16   GUGAUCCUCUUGUCAUCAAAUCAA   39 Target Full Sequence	2.5	TSA: Zea mays contig18226, mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||||||||||||||||*|| targets:401   GUGAUCCCCUUGUCACCAAAUGAA   424 Target Full Sequence	1.5	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
EU969052.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||*|||||=|||||||||| targets:1594   GUGAUCCACUUGUUACCAAAUCAA   1617 Target Full Sequence	2.5	Zea mays clone 325815 mRNA sequence	NA	coding protein	psRNATarget
XM_020539542.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||*|||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008651348.2	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||*|||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539541.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*|||||*|||||||||||||||= targets:158   GUGAUCCACUUGUCACCAAAUCAG   181 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA	NA	coding protein	psRNATarget
LQ235430.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*||*|=||||||||||||||=|| targets:58   GUGACCUCCUUGUCACCAAAUUAA   81 Target Full Sequence	2.5	Sequence 1425 from Patent EP2985353	NA	coding protein	psRNATarget
HI403300.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*||*|=||||||||||||||=|| targets:58   GUGACCUCCUUGUCACCAAAUUAA   81 Target Full Sequence	2.5	Sequence 1425 from Patent EP2074227	NA	coding protein	psRNATarget
JB163761.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*||*|=||||||||||||||=|| targets:58   GUGACCUCCUUGUCACCAAAUUAA   81 Target Full Sequence	2.5	Sequence 1425 from Patent EP2559767	NA	coding protein	psRNATarget
HI403427.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*||*|=||||||||||||||=|| targets:58   GUGACCUCCUUGUCACCAAAUUAA   81 Target Full Sequence	2.5	Sequence 1552 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235557.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*||*|=||||||||||||||=|| targets:58   GUGACCUCCUUGUCACCAAAUUAA   81 Target Full Sequence	2.5	Sequence 1552 from Patent EP2985353	NA	coding protein	psRNATarget
JB163888.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   =*||*|=||||||||||||||=|| targets:58   GUGACCUCCUUGUCACCAAAUUAA   81 Target Full Sequence	2.5	Sequence 1552 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001147318.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   |*|||||*|||*|||||||||||| targets:1650   AUGAUCCACUUAUCACCAAAUCAA   1673 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272865 (LOC100272865), mRNA	NA	coding protein	psRNATarget
BT039623.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   |*|||||*|||*|||||||||||| targets:1650   AUGAUCCACUUAUCACCAAAUCAA   1673 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0035A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537910.1	ncRNA:24   UCCUAGGGGAACAGUGGUUUAGUU   1   |*|||||*|||*|||||||||||| targets:1758   AUGAUCCACUUAUCACCAAAUCAA   1781 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome P450 87A3-like (LOC109939182), mRNA	NA	coding protein	psRNATarget