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BaseInfo

ncRNA ID novel_zma_miR6489
Species Zea mays
Class miRNA
Genome position Chr5:211351715-211351786 [+]
Reference genome RefGen_v4
Source SRR2647386
Length 24
Mature sequence(if miRNA) 1 - GAGAUUAUAAUCUGUCCAGAUUAU - 24
Stem-loop(if miRNA) --GA                           C   G
    GAUUAUAAUCUGUCCAGAUUAUAUAAU CGA U
    ||||||||||||||||||||||||||| |||
    CUAAUAUUAGACGGGUCUAAUAUAUUA GUU U
AAUC                           U   G
Stem-loop sequence GAGAUUAUAAUCUGUCCAGAUUAUAUAAUCCGAGUUGUUGUAUUAUAUAAUCUGGGCAGAUUAUAAUCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT055069.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||=|||=||||||||||||||
targets:550   AUAAUUUGGGCAGAUUAUAAUCUC   573

2.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008682894.2
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  ||||||||||||||||||||||*|
targets:5052   AUAAUCUGGACAGAUUAUAAUCCC   5075

1.5 PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008660268.2
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||||*||||||||||||||
targets:3138   AUAAUCUGGCCAGAUUAUAAUCUC   3161

1.0 PREDICTED: Zea mays WW domain-containing protein (LOC100279861), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651828.2
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  ||||||||||*||||||||||||*
targets:311   AUAAUCUGGAGAGAUUAUAAUCUA   334

2.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g15510, chloroplastic (LOC103630763), mRNA NA coding protein psRNATarget
XM_020547943.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||*|||||||||||||||*
targets:3421   AUAAUCUAGACAGAUUAUAAUCUA   3444

2.0 PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547944.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||*|||||||||||||||*
targets:3406   AUAAUCUAGACAGAUUAUAAUCUA   3429

2.0 PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547945.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||*|||||||||||||||*
targets:3277   AUAAUCUAGACAGAUUAUAAUCUA   3300

2.0 PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008681303.2
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  ||||||||||||||||||||*||*
targets:2334   AUAAUCUGGACAGAUUAUAAGCUA   2357

2.5 PREDICTED: Zea mays F-box protein At-B (LOC103654475), mRNA NA coding protein psRNATarget
NM_001177200.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||*|||||||||||||||*
targets:1292   AUAAUCUAGACAGAUUAUAAUCUA   1315

2.0 Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA NA coding protein psRNATarget
BT084075.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||*|||||||||||||||*
targets:1292   AUAAUCUAGACAGAUUAUAAUCUA   1315

2.0 Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds NA coding protein psRNATarget
BT062324.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  |||||||||*||||||||||||*|
targets:935   AUAAUCUGGUCAGAUUAUAAUCCC   958

2.5 Zea mays full-length cDNA clone ZM_BFb0280F21 mRNA, complete cds NA coding protein psRNATarget
BT053896.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  ||=||||*||||||||||||||*|
targets:1647   AUGAUCUAGACAGAUUAUAAUCAC   1670

2.5 Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds NA coding protein psRNATarget
NM_001152270.1
ncRNA:24   UAUUAGACCUGUCUAAUAUUAGAG   1
  ||=||||*||||||||||||||*|
targets:1647   AUGAUCUAGACAGAUUAUAAUCAC   1670

2.5 Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA NA coding protein psRNATarget
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