Search result

BaseInfo

ncRNA ID	novel_zma_miR6488
Species	Zea mays
Class	miRNA
Genome position	Chr5:209728967-209729065 [+]
Reference genome	RefGen_v4
Source	SRR2647386;SRR2647388
Length	23
Mature sequence(if miRNA)	77 - ACGAUCUGGCACUCGGCAAAGCC - 99
Stem-loop(if miRNA)	--                   CGA             AU       AAAA   CUUUGCCGAGUGCCAGGUC   GGCACUCGGCAAA  GGAUUUU    U   |||||||||||||||||||   |||||||||||||  |||||||    U   GAAACGGCUCACGGUCUAG   CCGUGAGCCGUUU  CUUAAAA    U CC                   CAC             --       AAUU
Stem-loop sequence	CUUUGCCGAGUGCCAGGUCCGAGGCACUCGGCAAAAUGGAUUUUAAAAUUUUUAAAAAAUUCUUUGCCGAGUGCCCACGAUCUGGCACUCGGCAAAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538844.1	ncRNA:23   CCGAAACGGCUCACGGUCUAGCA   1   |||*|*|*||||||||||||||| targets:1561   GGCGUCGACGAGUGCCAGAUCGU   1583 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100273558 (LOC100273558), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066385.1	ncRNA:23   CCGAAACGGCUCACGGUCUAGCA   1   |||*|*|*||||||||||||||| targets:1992   GGCGUCGACGAGUGCCAGAUCGU   2014 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0036F07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147976.1	ncRNA:23   CCGAAACGGCUCACGGUCUAGCA   1   |||*|*|*||||||||||||||| targets:2076   GGCGUCGACGAGUGCCAGAUCGU   2098 Target Full Sequence	2.0	Zea mays uncharacterized LOC100273558 (LOC100273558), mRNA	NA	coding protein	psRNATarget
BT041383.1	ncRNA:23   CCGAAACGGCUCACGGUCUAGCA   1   |||*|*|*||||||||||||||| targets:2076   GGCGUCGACGAGUGCCAGAUCGU   2098 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0123F17 mRNA, complete cds	NA	coding protein	psRNATarget