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BaseInfo

ncRNA ID novel_zma_miR6486
Species Zea mays
Class miRNA
Genome position Chr5:176094533-176094619 [+]
Reference genome RefGen_v4
Source SRR2647386
Length 24
Mature sequence(if miRNA) 1 - AAACCAUAGGGAUUGAAGGGGAUU - 24
Stem-loop(if miRNA) -AAAC            A          AGGAAUUAGA   GAU
     CAUAGGGAUUGA GGGGAUUAGA          GAG   U
     |||||||||||| ||||||||||          |||
     GUAUCCCUAACU CCCCUAAUUU          UUC   U
GUUAA            C          --AGGAGAUG   AGU
Stem-loop sequence AAACCAUAGGGAUUGAAGGGGAUUAGAAGGAAUUAGAGAGGAUUUUGACUUGUAGAGGAUUUAAUCCCCCUCAAUCCCUAUGAAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ083462.1
ncRNA:24   UUAGGGGAAGUUAGGGAUACCAAA   1
  |||||||*||||||||||||||||
targets:41   AAUCCCCCUCAAUCCCUAUGGUUU   64

1.0 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
HI407338.1
ncRNA:24   UUAGGGGAAGUUAGGGAUACCAAA   1
  |||||||*|||||||||||||*||
targets:75   AAUCCCCCUCAAUCCCUAUGGAUU   98

2.5 Sequence 5463 from Patent EP2074227 NA coding protein psRNATarget
JB167799.1
ncRNA:24   UUAGGGGAAGUUAGGGAUACCAAA   1
  |||||||*|||||||||||||*||
targets:75   AAUCCCCCUCAAUCCCUAUGGAUU   98

2.5 Sequence 5463 from Patent EP2559767 NA coding protein psRNATarget
LQ239468.1
ncRNA:24   UUAGGGGAAGUUAGGGAUACCAAA   1
  |||||||*|||||||||||||*||
targets:75   AAUCCCCCUCAAUCCCUAUGGAUU   98

2.5 Sequence 5463 from Patent EP2985353 NA coding protein psRNATarget
XM_020547439.1
ncRNA:24   UUAGGGGAAGUUAGGGAUACCAAA   1
  |||||||*|||||||||||||*||
targets:3929   AAUCCCCCUCAAUCCCUAUGGAUU   3952

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
BT087370.2
ncRNA:24   UUAGGGGAAGUUAGGGAUACCAAA   1
  |=|||*|*||||||||||||||||
targets:277   AGUCCACCUCAAUCCCUAUGGUUU   300

2.0 Zea mays full-length cDNA clone ZM_BFb0056A06 mRNA, complete cds NA coding protein psRNATarget
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