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BaseInfo

ncRNA ID novel_zma_miR6475
Species Zea mays
Class miRNA
Genome position Chr4:184822879-184822933 [-]
Reference genome RefGen_v4
Source SRR2647386
Length 24
Mature sequence(if miRNA) 1 - UUCCACUGGCGGUUCUGUUACACU - 24
Stem-loop(if miRNA) --CU     C           A     
    UAACA AACCGCCAGUG AAAUAG
    ||||| ||||||||||| |||||G
    AUUGU UUGGCGGUCAC UUUAUA
UCAC     C           C     
Stem-loop sequence CUUAACACAACCGCCAGUGAAAAUAGGAUAUUUCCACUGGCGGUUCUGUUACACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101180.1
ncRNA:24   UCACAUUGUCUUGGCGGUCACCUU   1
  =||||||||||||||*||||||||
targets:26   GGUGUAACAGAACCGACAGUGGAA   49

1.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget
EU974548.1
ncRNA:24   UCACAUUGUCUUGGCGGUCACCUU   1
  ****||||*||||||=||||||||
targets:1787   CACUUAACUGAACCGUCAGUGGAA   1810

2.5 Zea mays clone 452478 mRNA sequence NA coding protein psRNATarget
EU975266.1
ncRNA:24   UCACAUUGUCUUGGCGGUCACCUU   1
  |**|*||||||||*||||||||||
targets:5   AACGAAACAGAACGGCCAGUGGAA   28

1.5 Zea mays clone 486044 mRNA sequence NA coding protein psRNATarget
XM_008676448.2
ncRNA:24   UCACAUUGUCUUGGCGGUCACCUU   1
  |**|*||||||||*||||||||||
targets:10   AACGAAACAGAACGGCCAGUGGAA   33

1.5 PREDICTED: Zea mays hypothetical protein (LOC103650853), mRNA NA coding protein psRNATarget