Search result

BaseInfo

ncRNA ID novel_zma_miR6463
Species Zea mays
Class miRNA
Genome position Chr4:148036718-148036834 [+]
Reference genome RefGen_v4
Source SRR2647386
Length 22
Mature sequence(if miRNA) 1 - UGAUCAAAUAAUAUUAUACAUU - 22
Stem-loop(if miRNA) --- G     A   U       A UG       GUG     AUAU     -   -    GA
   U AUCAA UAA AUUAUAC U  GAUUUGA   AAUAU    GUGAG GGU UAUG  G
   | ||||| ||| ||||||| |  |||||||   |||||    ||||| ||| ||||
   G UAGUU GUU UAAUGUG G  CUGAAUU   UUGUA    UACUU CCA GUAU  C
UUA G     A   -       - GU       GUG     GUUU     A   A    AG
Stem-loop sequence UGAUCAAAUAAUAUUAUACAUUGGAUUUGAGUGAAUAUAUAUGUGAGGGUUAUGGAGCGAUAUGAACCAUUCAUUUUGAUGUUGUGUUAAGUCUGGGUGUAAUUUGAUUGAUGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008666132.2
ncRNA:22   UUACAUAUUAUAAUAAACUAGU   1
  |*|||||**|||||||||||||
targets:1354   ACUGUAUUUUAUUAUUUGAUCA   1375

2.0 PREDICTED: Zea mays probable glucuronosyltransferase Os05g0559600 (LOC103642988), transcript variant X5, mRNA NA coding protein psRNATarget
EZ064107.1
ncRNA:22   UUACAUAUUAUAAUAAACUAGU   1
  ||*|*|*|||||||||||||||
targets:189   AACGAACAAUAUUAUUUGAUCA   210

2.0 TSA: Zea mays contig65230, mRNA sequence NA coding protein psRNATarget