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BaseInfo

ncRNA ID	novel_zma_miR6460
Species	Zea mays
Class	miRNA
Genome position	Chr9:79800884-79800941 [-]
Reference genome	RefGen_v4
Source	SRR1618883;SRR4237221;SRR5105961
Length	24
Mature sequence(if miRNA)	35 - AGCACUCGGCAAAGAAGGAACACC - 58
Stem-loop(if miRNA)	--                 GAAC   UAG   AGCACUCGGCAAAGAAG    ACC   G   |||||||||||||||||    |||   UCGUGAGCCGUUUCUUC    UGG   C UG                 GAUA   CCA
Stem-loop sequence	AGCACUCGGCAAAGAAGGAACACCUAGGCACCGGUAUAGCUUCUUUGCCGAGUGCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167488.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   |||*||**|||||||||||||||| targets:47   GGUCUUGGUUCUUUGCCGAGUGCU   70 Target Full Sequence	2.0	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   |||*||**|||||||||||||||| targets:47   GGUCUUGGUUCUUUGCCGAGUGCU   70 Target Full Sequence	2.0	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   |||*||**|||||||||||||||| targets:47   GGUCUUGGUUCUUUGCCGAGUGCU   70 Target Full Sequence	2.0	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   *||*|*|||||||||||||||*|| targets:92   AGUCUGCCUUCUUUGCCGAGUACU   115 Target Full Sequence	2.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   *||*|*|||||||||||||||*|| targets:92   AGUCUGCCUUCUUUGCCGAGUACU   115 Target Full Sequence	2.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   *||*|*|||||||||||||||*|| targets:92   AGUCUGCCUUCUUUGCCGAGUACU   115 Target Full Sequence	2.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   ****||||*||||||||||||||* targets:10   AAGAUUCCAUCUUUGCCGAGUGCC   33 Target Full Sequence	2.0	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   ****||||*||||||||||||||* targets:10   AAGAUUCCAUCUUUGCCGAGUGCC   33 Target Full Sequence	2.0	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   ****||||*||||||||||||||* targets:10   AAGAUUCCAUCUUUGCCGAGUGCC   33 Target Full Sequence	2.0	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
JB167528.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   ***|*|=|*||||||||||||||| targets:8   ACAGAUUCGUCUUUGCCGAGUGCU   31 Target Full Sequence	2.0	Sequence 5192 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239197.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   ***|*|=|*||||||||||||||| targets:8   ACAGAUUCGUCUUUGCCGAGUGCU   31 Target Full Sequence	2.0	Sequence 5192 from Patent EP2985353	NA	coding protein	psRNATarget
HI407067.1	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   ***|*|=|*||||||||||||||| targets:8   ACAGAUUCGUCUUUGCCGAGUGCU   31 Target Full Sequence	2.0	Sequence 5192 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   CCACAAGGAAGAAACGGCUCACGA   1   |*****|||||||||||||||||* targets:8   GCAAAGCCUUCUUUGCCGAGUGCC   31 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget