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BaseInfo

ncRNA ID novel_zma_miR6459
Species Zea mays
Class miRNA
Genome position Chr3:51185419-51185474 [-]
Reference genome RefGen_v4
Source SRR2647386;SRR2647387;SRR2647388
Length 24
Mature sequence(if miRNA) 33 - AAUCUGCGCGCGAUUUGUGGGCGC - 56
Stem-loop(if miRNA) ------A       CGCGAUUUGUGGGCGC
       AUCUGCG                G
       |||||||
       UGGCGGU                G
CGUUAGG       AGGUACCGUCGAGAUA
Stem-loop sequence AAUCUGCGCGCGAUUUGUGGGCGCGGAUAGAGCUGCCAUGGAUGGCGGUGGAUUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066811.2
ncRNA:24   CG--CGGGUGUUUAGCGCGCGUCUAA   1
  ||--|*||||=*=|||||||||||||
targets:640   GCCAGACCACGUGUCGCGCGCAGAUU   665

3.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   CG--CGGGUGUUUAGCGCGCGUCUAA   1
  ||--|*||||=*=|||||||||||||
targets:640   GCCAGACCACGUGUCGCGCGCAGAUU   665

3.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget