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BaseInfo

ncRNA ID	novel_zma_miR6449
Species	Zea mays
Class	miRNA
Genome position	Chr3:222967340-222967520 [+]
Reference genome	RefGen_v4
Source	SRR2647385;SRR1583942
Length	24
Mature sequence(if miRNA)	158 - UAAAAAUCUGCGGAAACCAAACGC - 181
Stem-loop(if miRNA)	--        CA  G        A        AUUUUAAGAAUAUAUUAUGG UCCAAACAGAGUUUAUUCUGUGCCUUAGAUUCUGCGCUCGUAGAAA   GUUUGGUU  CG UAGAUUUU AGAAUCUG                    A                                              C   ||||||||  || |||||||| ||||||||                    |                                              A   CAAACCAA  GC GUCUAAAA UUUUAGAC                    C                                              A CG        AG  -        A        -----------------GUA AAGUGCAAUGGGUUUUUUUGGGUUGAUACCGAACUAAGAUGUCUAA
Stem-loop sequence	GUUUGGUUCACGGUAGAUUUUAAGAAUCUGAUUUUAAGAAUAUAUUAUGGAUCCAAACAGAGUUUAUUCUGUGCCUUAGAUUCUGCGCUCGUAGAAACAAAAUCUGUAGAAUCAAGCCAUAGUUGGGUUUUUUUGGGUAACGUGAACAUGCAGAUUUUAAAAAUCUGCGGAAACCAAACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970052.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:691   GUGUUUGGUUUCCGCAGAUUUUUA   714 Target Full Sequence	0.0	Zea mays clone 339098 mRNA sequence	NA	coding protein	psRNATarget
BT039465.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:969   GUGUUUGGUUUCCGCAGAUUUUUA   992 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0014M11 mRNA, complete cds	NA	coding protein	psRNATarget
AF035460.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:985   GUGUUUGGUUUCCGCAGAUUUUUA   1008 Target Full Sequence	0.0	Zea mays low molecular weight heat shock protein precursor (hsp22) mRNA, nuclear gene encoding mitochondrial protein, complete cds	NA	coding protein	psRNATarget
NM_001112137.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:985   GUGUUUGGUUUCCGCAGAUUUUUA   1008 Target Full Sequence	0.0	Zea mays low molecular weight heat shock protein precursor (hsp22), mRNA	NA	coding protein	psRNATarget
AY104434.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:995   GUGUUUGGUUUCCGCAGAUUUUUA   1018 Target Full Sequence	0.0	Zea mays PCO116068 mRNA sequence	NA	coding protein	psRNATarget
XM_008679574.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:1013   GUGUUUGGUUUCCGCAGAUUUUUA   1036 Target Full Sequence	0.0	PREDICTED: Zea mays low molecular weight heat shock protein precursor (hsp22), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU960464.1	ncRNA:24   CGCAAACCAAAGGCGUCUAAAAAU   1   |=|||||||||||||||||||||| targets:1005   GUGUUUGGUUUCCGCAGAUUUUUA   1028 Target Full Sequence	0.0	Zea mays clone 225103 heat shock 22 kDa protein mRNA, complete cds	NA	coding protein	psRNATarget