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BaseInfo

ncRNA ID novel_zma_miR6445
Species Zea mays
Class miRNA
Genome position Chr3:198556277-198556347 [+]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - CCUGGGACACUCGGCAAAGAGCCC - 24
Stem-loop(if miRNA) ---CCUG  A                C C  -   AG
       GG CACUCGGCAAAGAGCC G CA GGG  G
       || |||||||||||||||| | || |||
       UC GUGAGCCGUUUCUUGG C GU CCC  G
GCGUGUA  -                A U  A   CU
Stem-loop sequence CCUGGGACACUCGGCAAAGAGCCCGCCAGGGAGGGUCCCCAUGUCAGGUUCUUUGCCGAGUGCUAUGUGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008680068.2
ncRNA:24   CCCGAGAAACGGCUCACAGGGUCC   1
  ***|||||||||||||||||*||*
targets:126   AACCUCUUUGCCGAGUGUCCGAGA   149

2.5 PREDICTED: Zea mays uncharacterized LOC103653106 (LOC103653106), mRNA NA coding protein psRNATarget
EU952231.1
ncRNA:24   CCCGAGAAACGGCUCACAGGGUCC   1
  ***=*|||||||||||||||*|||
targets:1443   AAAUACUUUGCCGAGUGUCCAAGG   1466

1.5 Zea mays clone 1234152 mRNA sequence NA coding protein psRNATarget