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BaseInfo

ncRNA ID	novel_zma_miR6442
Species	Zea mays
Class	miRNA
Genome position	Chr3:180892297-180892354 [+]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	1 - ACGGUCCGCAGCCUGGUGCGAGGC - 24
Stem-loop(if miRNA)	--         AG    G   -   - CG G   ACGGUCCGC  CCUG UGC GAG G  C G   |||||||||  |||| ||| ||| |  |   UGUCAGGUG  GGAC GCG CUC C  G U CC         -G    -   U   U AU G
Stem-loop sequence	ACGGUCCGCAGCCUGGUGCGAGGCGCGGUGGUACUCUCUGCGCAGGGGUGGACUGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088349.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   ||||||||||||||*||||||||| targets:1308   GCCUCGCACCAGGCCGCGGACCGU   1331 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   |||*||||||||||*||||||||| targets:1235   GCCGCGCACCAGGCCGCGGACCGU   1258 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   ||||||||||||||*||||||||| targets:1308   GCCUCGCACCAGGCCGCGGACCGU   1331 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   |||*||||||||||*||||||||| targets:1235   GCCGCGCACCAGGCCGCGGACCGU   1258 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   ||||||||||||||*||||||||| targets:2751   GCCUCGCACCAGGCCGCGGACCGU   2774 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   |||**|||||||||*||||||||| targets:2678   GCCGGGCACCAGGCCGCGGACCGU   2701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   CGGAGCGUGGUCCGACGCCUGGCA   1   |=|**||*||||||*||||||||| targets:83   GUCCGGCCCCAGGCCGCGGACCGU   106 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget