Search result

BaseInfo

ncRNA ID	ath-miRf10072-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UCUACUCGACCAGGGGGUCGAGUGG - NA
Stem-loop(if miRNA)	G          AGG           UG   --------------   G GACAAGUCGGAGUCUUCUUCUCUUUCUCAU CG UACUCGACCC   UGGUCGAGUAG  GGU              CGA U                              G || ||||||||||   |||||||||||  |||              ||| | GU GUGAGCUGGG   ACCAGCUCAUC  UCG              AAG A                              C   G          -GG           UU   UAGUAGCGAAAUCU   - AGAGCUAAGGCGUGAGUUGGUCUGUAAGCU
Stem-loop sequence	CGGUACUCGACCCAGGUGGUCGAGUAGUGGGUCGAGUGACAAGUCGGAGUCUUCUUCUCUUUCUCAUGCUCGAAUGUCUGGUUGAGUGCGGAAUCGAGAAGAAUCUAAAGCGAUGAUGCUUUCUACUCGACCAGGGGGUCGAGUGGUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183192.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ||||||||||||||||||||||||| targets:124   CCACUCGACCCCCUGGUCGAGUAGA   148 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ||||||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGUAGA   523 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ||||||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGUAGA   523 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   =|||||||||||||||||||||||| targets:1571   UCACUCGACCCCCUGGUCGAGUAGA   1595 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ||||||||||||||||||||||||* targets:90   CCACUCGACCCCCUGGUCGAGUAGC   114 Target Full Sequence	1.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ||||||||||||*|||||||||||| targets:489   CCACUCGACCCCGUGGUCGAGUAGA   513 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |||||||||||||*||||||||||| targets:1104   CCACUCGACCCCCAGGUCGAGUAGA   1128 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
EF183192.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |||*||*|||||*|||||||||||| targets:169   CCAGUCAACCCCGUGGUCGAGUAGA   193 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |||*||*|||||*|||||||||||| targets:544   CCAGUCAACCCCGUGGUCGAGUAGA   568 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |||*||*|||||*|||||||||||| targets:544   CCAGUCAACCCCGUGGUCGAGUAGA   568 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ==||*||||||||||||||||||** targets:583   UUACYCGACCCCCUGGUCGAGUAUC   607 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |||||||||||||||||||||||** targets:230   CCACUCGACCCCCUGGUCGAGUAUC   254 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |=|||||||||||||||||||||** targets:181   CUACUCGACCCCCUGGUCGAGUAUC   205 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |||||||||||||||||||||||** targets:230   CCACUCGACCCCCUGGUCGAGUAUC   254 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   |=|||||||||||||||||||||** targets:181   CUACUCGACCCCCUGGUCGAGUAUC   205 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ==|||||||||||||||||||||** targets:308   UUACUCGACCCCCUGGUCGAGUAUC   332 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
EF183194.1	ncRNA:25   GGUGAGCUGGGGGACCAGCUCAUCU   1   ||||||||||*||*||||||||||| targets:449   CCACUCGACCACCAGGUCGAGUAGA   473 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget