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BaseInfo

ncRNA ID novel_zma_miR6429
Species Zea mays
Class miRNA
Genome position Chr2:54476909-54477022 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - AGAUCUGUGUUGGGCAAUUCAACC - 24
Stem-loop(if miRNA) --     ---        UU      UUUUAU   -    -G   GAAC      CACC      
  UUGAA   CCCAACAC  GGUCUU      UGG CUAA  AGU    CUUUGG    UGUAUAA
  |||||   ||||||||  ||||||      ||| ||||  |||    ||||||    ||||||C
  AACUU   GGGUUGUG  CUAGAA      ACC GAUU  UCA    GAGAUU    ACAUAUU
CC     AAC        -U      ------   U    GA   -AAC      ----      
Stem-loop sequence UUGAACCCAACACUUGGUCUUUUUUAUUGGCUAAGAGUGAACCUUUGGCACCUGUAUAACUUAUACAUUAGAGCAAACUAGUUAGUCCAAAGAUCUGUGUUGGGCAAUUCAACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948808.1
ncRNA:24   CCAACUUAACGGGUUGUGUCUAGA   1
  |||||||||||||||||||*||||
targets:147   GGUUGAAUUGCCCAACACAAAUCU   170

1.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget