Search result

BaseInfo

ncRNA ID	novel_zma_miR6427
Species	Zea mays
Class	miRNA
Genome position	Chr9:123556459-123556532 [-]
Reference genome	RefGen_v4
Source	SRR1618883;SRR5099742;SRR5100248
Length	21
Mature sequence(if miRNA)	1 - UUUUAGCCUCUCUAAUCCCCU - 21
Stem-loop(if miRNA)	--GU            CAC               CAA     GAUUAGAGGGGC   AAUCCCCUUGCUAUU   U     ||||||||||||   |||||||||||||||     CUAAUCUCUCCG   UUAGGGGAACGAUAA   U UCCC            AUU               AUU
Stem-loop sequence	GUGAUUAGAGGGGCCACAAUCCCCUUGCUAUUCAAUUUUAAAUAGCAAGGGGAUUUUAGCCUCUCUAAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651784.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008651781.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651780.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651782.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||||||||||||=|||||||| targets:677   AGGGGAUUAGAGGGGCUAAAA   697 Target Full Sequence	1.5	PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956908.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   |||*||||=|||||||||||| targets:1006   AGGAGAUUGGAGAGGCUAAAA   1026 Target Full Sequence	2.5	Zea mays clone 1577150 mRNA sequence	NA	coding protein	psRNATarget
JB163454.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||*|*|||||||||||||||| targets:29   AGAGAAUUAGAGAGGCUAAAA   49 Target Full Sequence	2.0	Sequence 1118 from Patent EP2559767	NA	coding protein	psRNATarget
HI402993.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||*|*|||||||||||||||| targets:29   AGAGAAUUAGAGAGGCUAAAA   49 Target Full Sequence	2.0	Sequence 1118 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235123.1	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   ||*|*|||||||||||||||| targets:29   AGAGAAUUAGAGAGGCUAAAA   49 Target Full Sequence	2.0	Sequence 1118 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008647699.2	ncRNA:21   UCCCCUAAUCUCUCCGAUUUU   1   |**|||||=|||||||||||| targets:1816   AUAGGAUUGGAGAGGCUAAAA   1836 Target Full Sequence	2.5	PREDICTED: Zea mays calcium uptake protein, mitochondrial (LOC103627407), mRNA	NA	coding protein	psRNATarget