Search result

BaseInfo

ncRNA ID	osa-miRf10239-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	24
Mature sequence(if miRNA)	NA - GUACGCUGAAGGUCCCUCAACUUG - NA
Stem-loop(if miRNA)	A        A                       AACACAUAUAAAC  CCAGCCAUAC CGAUG CAAGUUGA GGACCUUCGGUGUACUUUUUCCU             GG          U ||||| |||||||| |||||||||||||||||||||||             || GCUAC GUUCAACU CCUGGAAGUCGCAUGAAAAAGGA             AG          G      G        C                       -----------AA  UUUACUCCGG
Stem-loop sequence	CGAUGACAAGUUGAAGGACCUUCGGUGUACUUUUUCCUAACACAUAUAAACGGCCAGCCAUACUGGGCCUCAUUUGAAAAGGAAAAAGUACGCUGAAGGUCCCUCAACUUGGCAUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK067333.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||||||||||||||||| targets:1204   CAAGUUGAGGGACCUUCAGCGUAC   1227 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013104O03, full insert sequence	NA	coding protein	psRNATarget
XM_015772632.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||||||||||||||||| targets:1249   CAAGUUGAGGGACCUUCAGCGUAC   1272 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor IIF subunit alpha (LOC9266910), mRNA	transcription initiation factor IIF subunit alpha(LOC9266910)	coding protein	psRNATarget
XM_015788110.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||||||||||||=|||| targets:1139   CAAGUUGAGGGACCUUCAGUGUAC   1162 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281423 (LOC107281423), mRNA	uncharacterized LOC107281423(LOC107281423)	coding protein	psRNATarget
XM_015787239.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||||||||||||=|||| targets:1505   CAAGUUGAGGGACCUUCAGUGUAC   1528 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277241 (LOC107277241), mRNA	uncharacterized LOC107277241(LOC107277241)	coding protein	psRNATarget
XM_015765917.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||||||||||||=|||* targets:1741   CAAGUUGAGGGACCUUCAGUGUAA   1764 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279856 (LOC107279856), mRNA	uncharacterized LOC107279856(LOC107279856)	coding protein	psRNATarget
XM_015768099.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||*|||||||||=|||| targets:1184   CAAGUUGAGAGACCUUCAGUGUAC   1207 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X3, mRNA	mediator-associated protein 2(LOC4326241)	coding protein	psRNATarget
XM_015768108.1	ncRNA:24   GUUCAACUCCCUGGAAGUCGCAUG   1   |||||||||*|||||||||=|||| targets:1181   CAAGUUGAGAGACCUUCAGUGUAC   1204 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mediator-associated protein 2 (LOC4326241), transcript variant X4, mRNA	mediator-associated protein 2(LOC4326241)	coding protein	psRNATarget