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BaseInfo

ncRNA ID novel_zma_miR6417
Species Zea mays
Class miRNA
Genome position Chr10:74997337-74997439 [-]
Reference genome RefGen_v4
Source SRR2647385;SRR2647467
Length 24
Mature sequence(if miRNA) 1 - GAGGACGACUCCAAUUCAAGAGGG - 24
Stem-loop(if miRNA) --    A  UU        A    - AC   UAAC      GA    AA   AU
  CUCU GA  UUGGGGUU GUCC C  CUU    AUUUCA  UUUG  GCC  A
  |||| ||  |||||||| |||| |  |||    ||||||  ||||  |||  U
  GAGA CU  AACCUCAG CAGG G  GAG    UAGAGU  AAGC  UGG  A
GG    A  -U        -    A CU   ---C      AG    AG   GU
Stem-loop sequence CUCUAGAUUUUGGGGUUAGUCCCACCUUUAACAUUUCAGAUUUGAAGCCAUAUAUGGGUGACGAAGAUGAGAUCGAGUCGAGGACGACUCCAAUUCAAGAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT062281.2
ncRNA:24   GGGAGAACUUAACCUCAGCAGGAG   1
  |||*||||||||||||||*||||*
targets:579   CCCACUUGAAUUGGAGUCAUCCUG   602

2.5 Zea mays full-length cDNA clone ZM_BFb0274N02 mRNA, complete cds NA coding protein psRNATarget