Search result

BaseInfo

ncRNA ID	novel_zma_miR6416
Species	Zea mays
Class	miRNA
Genome position	Chr2:215494728-215494831 [-]
Reference genome	RefGen_v4
Source	SRR2647385;SRR2647467
Length	24
Mature sequence(if miRNA)	81 - GACUAUCUAUCUAGUUUGACUAGU - 104
Stem-loop(if miRNA)	--     U           G    -    GAG     AG       U    AAU   GACUA CUAUCUAGUUU ACUA GUUA   UGGCU  CCAAAUU GGCU   G   ||||| ||||||||||| |||| ||||   |||||  ||||||| ||||   CUGAU GGUAGAUUAAG UGGU CAAU   GCUGA  GGUUUAA CCGA   A GU     C           -    U    -AA     GA       -    GGG
Stem-loop sequence	GACUAUCUAUCUAGUUUGACUAGUUAGAGUGGCUAGCCAAAUUUGGCUAAUGAGGGAGCCAAUUUGGAGAGUCGAAUAACUUGGUGAAUUAGAUGGCUAGUCUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651671.2	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   |||||*|||||||||||||||||| targets:2095   ACUAGCCAAACUAGAUAGAUAGUC   2118 Target Full Sequence	1.0	PREDICTED: Zea mays heat stress transcription factor A-4d (LOC103630625), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008651672.2	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   |||||*|||||||||||||||||| targets:2129   ACUAGCCAAACUAGAUAGAUAGUC   2152 Target Full Sequence	1.0	PREDICTED: Zea mays heat stress transcription factor A-4d (LOC103630625), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660803.2	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   |||||*=||||||||||||||||| targets:425   ACUAGCUAAACUAGAUAGAUAGUC   448 Target Full Sequence	2.0	PREDICTED: Zea mays dwarf plant 3 (d3), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543846.1	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   |||||*=||||||||||||||||| targets:426   ACUAGCUAAACUAGAUAGAUAGUC   449 Target Full Sequence	2.0	PREDICTED: Zea mays dwarf plant 3 (d3), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT041934.2	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   ||*||*|||||||||||||||||| targets:1607   ACGAGCCAAACUAGAUAGAUAGUC   1630 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0082L23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156642.1	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   ||*||*|||||||||||||||||| targets:1671   ACGAGCCAAACUAGAUAGAUAGUC   1694 Target Full Sequence	1.0	Zea mays CCT motif family protein (LOC100283743), mRNA	NA	coding protein	psRNATarget
EU965769.1	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   ||*||*|||||||||||||||||| targets:1671   ACGAGCCAAACUAGAUAGAUAGUC   1694 Target Full Sequence	1.0	Zea mays clone 288773 CCT motif family protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552249.1	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   ||*||*|||||||||||||||||| targets:1719   ACGAGCCAAACUAGAUAGAUAGUC   1742 Target Full Sequence	1.0	PREDICTED: Zea mays CCT motif family protein (LOC100283743), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679493.2	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   ||*||*|||||||||||||||||| targets:2135   ACGAGCCAAACUAGAUAGAUAGUC   2158 Target Full Sequence	1.0	PREDICTED: Zea mays CCT motif family protein (LOC100283743), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679490.2	ncRNA:24   UGAUCAGUUUGAUCUAUCUAUCAG   1   ||*||*|||||||||||||||||| targets:2981   ACGAGCCAAACUAGAUAGAUAGUC   3004 Target Full Sequence	1.0	PREDICTED: Zea mays CCT motif family protein (LOC100283743), transcript variant X2, mRNA	NA	coding protein	psRNATarget