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BaseInfo

ncRNA ID novel_zma_miR6415
Species Zea mays
Class miRNA
Genome position Chr2:216439159-216439308 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 20
Mature sequence(if miRNA) 1 - ACGGCUGGCUCUAGAAAGUU - 20
Stem-loop(if miRNA) --       C  -  UC  U           G   CA CUG     CA     --A GA   G              C
  CUUUCUA GA CC  CU UAGGAAGUUAG UUU  G   UUGAC  GUCAA   C  AAA CUAACUUCCUACGG C
  ||||||| || ||  || ||||||||||| |||  |   |||||  |||||   |  ||| ||||||||||||||
  GAAAGAU CU GG  GG AUCCUUCAAUC AAA  C   AACUG  CAGUU   G  UUU GAUUGAAGGAUGUC U
UU       -  C  UC  C           G   AG --A     AC     GUC AC   G              C
Stem-loop sequence CUUUCUACGACCUCCUUUAGGAAGUUAGGUUUCAGCUGUUGACCAGUCAAACGAAAAGCUAACUUCCUACGGCCUCCUGUAGGAAGUUAGGUUUCAGCUGUUGACCAGUCAAACGAAAAGCUAACUUCCUACGGCUGGCUCUAGAAAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008665803.1
ncRNA:20   UUGAAAGAUCUCGGUCGGCA   1
  ||||*||||*||||||||||
targets:564   AACUAUCUAUAGCCAGCCGU   583

2.5 PREDICTED: Zea mays proline-rich protein 36-like (LOC103642550), mRNA NA coding protein psRNATarget