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BaseInfo

ncRNA ID	novel_zma_miR6409
Species	Zea mays
Class	miRNA
Genome position	Chr10:77155660-77155756 [-]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	1 - CUCAAUCCACUUCAUUACCUUUGA - 24
Stem-loop(if miRNA)	--             -   A                            A   AAGGGUAAUGGAG GGA UUGAGGGGGCUAGAAUCCCUCACUAUUC A   ||||||||||||| ||| |||||||||||||||||||||||||||| G   UUUCCAUUACUUC CCU AACUCCCCCGAUCUUAGGGAGUGAUGAG U AG             A   -                            U
Stem-loop sequence	AAGGGUAAUGGAGGGAAUUGAGGGGGCUAGAAUCCCUCACUAUUCAAGUUGAGUAGUGAGGGAUUCUAGCCCCCUCAAUCCACUUCAUUACCUUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541065.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   |*|||||*|*|||||||||||||| targets:1298   UGAAAGGGAUUGAAGUGGAUUGAG   1321 Target Full Sequence	2.0	PREDICTED: Zea mays 3-oxo-5-alpha-steroid 4-dehydrogenase 1 (LOC100281302), mRNA	NA	coding protein	psRNATarget
XM_008666548.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   |*|||||*|*|||||||||||||| targets:167   UGAAAGGGAUUGAAGUGGAUUGAG   190 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   *=|=|||*|*|||||||||||||| targets:4   AUAGAGGGAUUGAAGUGGAUUGAG   27 Target Full Sequence	2.0	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   *=|=|||*|*|||||||||||||| targets:4   AUAGAGGGAUUGAAGUGGAUUGAG   27 Target Full Sequence	2.0	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   *=|=|||*|*|||||||||||||| targets:4   AUAGAGGGAUUGAAGUGGAUUGAG   27 Target Full Sequence	2.0	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
EU960447.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   **|=|||*|*|||||||||||||| targets:1134   AAAGAGGAACUGAAGUGGAUUGAG   1157 Target Full Sequence	2.0	Zea mays clone 224969 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150023.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   **|=|||*|*|||||||||||||| targets:1134   AAAGAGGAACUGAAGUGGAUUGAG   1157 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA	NA	coding protein	psRNATarget
BT066084.1	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   **|=|||*|*|||||||||||||| targets:1155   AAAGAGGAACUGAAGUGGAUUGAG   1178 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0286M14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   AGUUUCCAUUACUUCACCUAACUC   1   |*|||||*|*|||||||||||||* targets:1999   UAAAAGGGAUUGAAGUGGAUUGAA   2022 Target Full Sequence	3.0	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget