ncRNA ID | novel_zma_miR6407 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr2:211614376-211614569 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647385 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AACUUCCUAUGGCCUGCUCUAGGA - 24 |
Stem-loop(if miRNA) |
--A        U    U   C          -GG    AGCUA     CA        --AAAAG       C   C        C             G    ACUUCCUA GGCC GCU UAGGAAGUUA   UUUC     UUGAC  GUCAAAAG       CUAACUU CUA GGCUGGCU UAGGAAGUUAGCU C    |||||||| |||| ||| ||||||||||   ||||     |||||  ||||||||       ||||||| ||| |||||||| |||||||||||||    UGAAGGAU UCGG CGG AUCCUUCAAU   AAAG     AACUG  CAGUUUUC       GAUUGAA GAU UCGACCGG AUCCUUCAAUCGA A AAA        C    C   C          AGA    ---CA     AC        GACUUUA       A   C        C             C |
Stem-loop sequence | AACUUCCUAUGGCCUGCUCUAGGAAGUUAGGUUUCAGCUAUUGACCAGUCAAAAGAAAAGCUAACUUCCUACGGCUGGCUCUAGGAAGUUAGCUGCACAGCUAACUUCCUACGGCCAGCUCUAGAAAGUUAGAUUUCAGCUUUUGACCAGUCAAACGAAAAGAUAACUUCCUACGGCCGGCUCUAGGAAGUAAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EU949881.1 |
|
1.5 | Zea mays clone 450754 mRNA sequence | NA | coding protein | psRNATarget |