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BaseInfo

ncRNA ID novel_zma_miR6407
Species Zea mays
Class miRNA
Genome position Chr2:211614376-211614569 [+]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - AACUUCCUAUGGCCUGCUCUAGGA - 24
Stem-loop(if miRNA) --A        U    U   C          -GG    AGCUA     CA        --AAAAG       C   C        C             G
   ACUUCCUA GGCC GCU UAGGAAGUUA   UUUC     UUGAC  GUCAAAAG       CUAACUU CUA GGCUGGCU UAGGAAGUUAGCU C
   |||||||| |||| ||| ||||||||||   ||||     |||||  ||||||||       ||||||| ||| |||||||| |||||||||||||
   UGAAGGAU UCGG CGG AUCCUUCAAU   AAAG     AACUG  CAGUUUUC       GAUUGAA GAU UCGACCGG AUCCUUCAAUCGA A
AAA        C    C   C          AGA    ---CA     AC        GACUUUA       A   C        C             C
Stem-loop sequence AACUUCCUAUGGCCUGCUCUAGGAAGUUAGGUUUCAGCUAUUGACCAGUCAAAAGAAAAGCUAACUUCCUACGGCUGGCUCUAGGAAGUUAGCUGCACAGCUAACUUCCUACGGCCAGCUCUAGAAAGUUAGAUUUCAGCUUUUGACCAGUCAAACGAAAAGAUAACUUCCUACGGCCGGCUCUAGGAAGUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU949881.1
ncRNA:24   AGGAUCUCGUCCGGUAUCCUUCAA   1
  ||||||||||||||=|||||||||
targets:1063   UCCUAGAGCAGGCCGUAGGAAGUU   1086

1.5 Zea mays clone 450754 mRNA sequence NA coding protein psRNATarget