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BaseInfo

ncRNA ID	novel_zma_miR6397
Species	Zea mays
Class	miRNA
Genome position	Chr1:16279692-16279830 [+]
Reference genome	RefGen_v4
Source	SRR1618883
Length	24
Mature sequence(if miRNA)	1 - GCACUCGGUAAAGAGCUCUUUGCC - 24
Stem-loop(if miRNA)	--              -        C         AAAAU     AC    ---CAAA   CUUUUUCGCU   GCACUCGGUAAAGA GCUCUUUG CGAGUGUCA     AAAAC  UCGG       UAG          G   |||||||||||||| |||||||| |||||||||     |||||  ||||       |||          A   CGUGAGCCAUUUUU CGAGAAAC GCUUACGGU     UUUUG  AGCC       CAU          G AC              U        A         GUGUU     CA    AUUUUCC   UUUCUUUUAU
Stem-loop sequence	GCACUCGGUAAAGAGCUCUUUGCCGAGUGUCAAAAAUAAAACACUCGGCAAAUAGCUUUUUCGCUGAGUAUUUUCUUUUACCCUUUUACCGAACGUUUUUUGUGUGGCAUUCGACAAAGAGCUUUUUUACCGAGUGCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543430.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||| targets:1168   GGCAAAGAGCUCUUUGCCGAGUGC   1191 Target Full Sequence	1.5	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:59   GGCAAAGAGCUCUUUGCCGAGUGU   82 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:99   GGCAAAGAGCUCUUUGCCGAGUGU   122 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:59   GGCAAAGAGCUCUUUGCCGAGUGU   82 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:99   GGCAAAGAGCUCUUUGCCGAGUGU   122 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:59   GGCAAAGAGCUCUUUGCCGAGUGU   82 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:99   GGCAAAGAGCUCUUUGCCGAGUGU   122 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:1979   GGCAAAGAGCUCUUUGCCGAGUGU   2002 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   |||||||||||||||=|||||||= targets:1979   GGCAAAGAGCUCUUUGCCGAGUGU   2002 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
AY110931.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   ***|||||||||||||||*||||| targets:304   CUGAAAGAGCUCUUUACCCAGUGC   327 Target Full Sequence	1.5	Zea mays CL20018_1 mRNA sequence	NA	coding protein	psRNATarget
EU976558.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   ***|=|||||||||||||*||||| targets:223   CUGAGAGAGCUCUUUACCCAGUGC   246 Target Full Sequence	1.5	Zea mays clone 983099 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035155.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   ***|=|||||||||||||*||||| targets:747   CUGAGAGAGCUCUUUACCCAGUGC   770 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0042L02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138177.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   ***|=|||||||||||||*||||| targets:747   CUGAGAGAGCUCUUUACCCAGUGC   770 Target Full Sequence	1.5	Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (LOC100193009), mRNA	NA	coding protein	psRNATarget
BT018694.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   ***|=|||||||||||||*||||| targets:764   CUGAGAGAGCUCUUUACCCAGUGC   787 Target Full Sequence	1.5	Zea mays clone EL01N0513D01.d mRNA sequence	NA	coding protein	psRNATarget
EU971451.1	ncRNA:24   CCGUUUCUCGAGAAAUGGCUCACG   1   ***|=|||||||||||||*||||| targets:765   CUGAGAGAGCUCUUUACCCAGUGC   788 Target Full Sequence	1.5	Zea mays clone 365101 mRNA sequence	NA	coding protein	psRNATarget