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BaseInfo

ncRNA ID novel_zma_miR6393
Species Zea mays
Class miRNA
Genome position Chr1:62031760-62031821 [+]
Reference genome RefGen_v4
Source SRR2647385;SRR2647391
Length 24
Mature sequence(if miRNA) 1 - UAGAUCUUGGCGCCGAGGUAGGCA - 24
Stem-loop(if miRNA) --                       ACC  G
  UAGAUCUUGGCGCCGAGGUAGGC   CG U
  |||||||||||||||||||||||   || C
  AUCUAGAACCGCGGCUCCAUCCG   GC A
GU                       -CA  A
Stem-loop sequence UAGAUCUUGGCGCCGAGGUAGGCACCCGGUCAACGACGCCUACCUCGGCGCCAAGAUCUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008664820.2
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:9   CGCCUACCUCGGCGCCAAGAUCUA   32

0.0 PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA NA coding protein psRNATarget
XM_020544295.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:54   CGCCUACCUCGGCGCCAAGAUCUA   77

0.0 PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA NA coding protein psRNATarget
XM_020548134.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:31   CGCCUACCUCGGCGCCAAGAUCUA   54

0.0 PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA NA coding protein psRNATarget
XM_008666282.2
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:211   CGCCUACCUCGGCGCCAAGAUCUA   234

0.0 PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA NA coding protein psRNATarget
XM_020545942.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:211   CGCCUACCUCGGCGCCAAGAUCUA   234

0.0 PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA NA coding protein psRNATarget
XM_020545943.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:211   CGCCUACCUCGGCGCCAAGAUCUA   234

0.0 PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA NA coding protein psRNATarget
XM_008652363.2
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:215   CGCCUACCUCGGCGCCAAGAUCUA   238

0.0 PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA NA coding protein psRNATarget
XM_020541347.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:215   CGCCUACCUCGGCGCCAAGAUCUA   238

0.0 PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA NA coding protein psRNATarget
XM_020537732.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:280   CGCCUACCUCGGCGCCAAGAUCUA   303

0.0 PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA NA coding protein psRNATarget
XM_008654703.2
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||||||||||||||||||||||
targets:987   CGCCUACCUCGGCGCCAAGAUCUA   1010

0.0 PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA NA coding protein psRNATarget
XM_008678030.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  **||||||||||||||||||||||
targets:53   CACCUACCUCGGCGCCAAGAUCUA   76

0.0 PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA NA coding protein psRNATarget
XM_008672912.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  |*||||*||||||||||||||||=
targets:365   UUCCUAGCUCGGCGCCAAGAUCUG   388

2.0 PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA NA coding protein psRNATarget
XM_008652503.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  |*||||*||||||||||||||||=
targets:398   UUCCUAGCUCGGCGCCAAGAUCUG   421

2.0 PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA NA coding protein psRNATarget
XM_020552215.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  ||--|||||||*||||||||||||
targets:2   UG--UACCUCGACGCCAAGAUCUA   23

1.5 PREDICTED: Zea mays skin secretory protein xP2-like (LOC109945850), mRNA NA coding protein psRNATarget
JB166443.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  ****||*|||||||||||||||||
targets:141   CAGGUAGCUCGGCGCCAAGAUCUA   164

1.0 Sequence 4107 from Patent EP2559767 NA coding protein psRNATarget
HI405982.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  ****||*|||||||||||||||||
targets:141   CAGGUAGCUCGGCGCCAAGAUCUA   164

1.0 Sequence 4107 from Patent EP2074227 NA coding protein psRNATarget
LQ238112.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  ****||*|||||||||||||||||
targets:141   CAGGUAGCUCGGCGCCAAGAUCUA   164

1.0 Sequence 4107 from Patent EP2985353 NA coding protein psRNATarget
XM_020540041.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  |***||||||||||||||||||*|
targets:1020   UAAAUACCUCGGCGCCAAGAUCCA   1043

1.5 PREDICTED: Zea mays spidroin-1-like (LOC109940499), mRNA NA coding protein psRNATarget
XM_020547329.1
ncRNA:24   AC---GGAUGGAGCCGCGGUUCUAGAU   1
  ||---=|*|*|||||||||||||||||
targets:1830   UGGCAUCGAGCUCGGCGCCAAGAUCUA   1856

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020547327.1
ncRNA:24   AC---GGAUGGAGCCGCGGUUCUAGAU   1
  ||---=|*|*|||||||||||||||||
targets:1855   UGGCAUCGAGCUCGGCGCCAAGAUCUA   1881

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008668082.2
ncRNA:24   AC---GGAUGGAGCCGCGGUUCUAGAU   1
  ||---=|*|*|||||||||||||||||
targets:1862   UGGCAUCGAGCUCGGCGCCAAGAUCUA   1888

1.0 PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020540038.1
ncRNA:24   ACGGAUGGAGCCGCGGUUCUAGAU   1
  *|||*|*|||||||||||||||*|
targets:342   CGCCGAGCUCGGCGCCAAGAUCCA   365

2.5 PREDICTED: Zea mays circumsporozoite protein-like (LOC109940497), mRNA NA coding protein psRNATarget
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