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BaseInfo

ncRNA ID novel_zma_miR6388
Species Zea mays
Class miRNA
Genome position Chr10:97594084-97594150 [-]
Reference genome RefGen_v4
Source SRR2647385;SRR2647386;SRR2647388
Length 22
Mature sequence(if miRNA) 46 - AUGGAUCUACUUGAUGCACAGU - 67
Stem-loop(if miRNA) ---AUG         G U  A AG  U       
      GAUCUACUU A GC C  UG GAUUAGAU
      ||||||||| | || |  || |||||||C
      UUAGAUGAG U UG G  AU UUGGUUUA
UCUACA         G -  G GA  C       
Stem-loop sequence AUGGAUCUACUUGAUGCACAGUGUGAUUAGAUCAUUUGGUUCUAAGGGGUUGGAGUAGAUUACAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008668126.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||||||||||
targets:250   GUUGUGCAACAAGUAGAUCCAU   271

1.0 PREDICTED: Zea mays uncharacterized LOC103644987 (LOC103644987), mRNA NA coding protein psRNATarget
XM_020552306.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  |=||||||*|||||=|||||||
targets:241   AUUGUGCAACAAGUGGAUCCAU   262

2.5 PREDICTED: Zea mays uncharacterized LOC103654509 (LOC103654509), mRNA NA coding protein psRNATarget
XM_020552297.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:250   GUUGUGCAACAAGUGGAUCCAU   271

2.5 PREDICTED: Zea mays uncharacterized LOC103654451 (LOC103654451), mRNA NA coding protein psRNATarget
XM_020549051.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:250   GUUGUGCAACAAGUGGAUCCAU   271

2.5 PREDICTED: Zea mays uncharacterized LOC103647288 (LOC103647288), mRNA NA coding protein psRNATarget
XM_020543565.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:314   GUUGUGCAACAAGUGGAUCCAU   335

2.5 PREDICTED: Zea mays uncharacterized LOC109942130 (LOC109942130), mRNA NA coding protein psRNATarget
XM_008656916.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:238   GUUGUGCAACAAGUGGAUCCAU   259

2.5 PREDICTED: Zea mays uncharacterized LOC103634585 (LOC103634585), mRNA NA coding protein psRNATarget
XM_020537924.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:241   GUUGUGCAACAAGUGGAUCCAU   262

2.5 PREDICTED: Zea mays uncharacterized LOC109939628 (LOC109939628), mRNA NA coding protein psRNATarget
XM_020541466.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:34   GUUGUGCAACAAGUGGAUCCAU   55

2.5 PREDICTED: Zea mays uncharacterized LOC103632034 (LOC103632034), mRNA NA coding protein psRNATarget
XM_008664896.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:396   GUUGUGCAACAAGUGGAUCCAU   417

2.5 PREDICTED: Zea mays uncharacterized LOC103641547 (LOC103641547), mRNA NA coding protein psRNATarget
XM_020542907.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:250   GUUGUGCAACAAGUGGAUCCAU   271

2.5 PREDICTED: Zea mays uncharacterized LOC109941703 (LOC109941703), mRNA NA coding protein psRNATarget
XM_008655879.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:318   GUUGUGCAACAAGUGGAUCCAU   339

2.5 PREDICTED: Zea mays uncharacterized LOC103634323 (LOC103634323), mRNA NA coding protein psRNATarget
XM_020548822.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:269   GUUGUGCAACAAGUGGAUCCAU   290

2.5 PREDICTED: Zea mays uncharacterized LOC103646274 (LOC103646274), mRNA NA coding protein psRNATarget
XM_008680701.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:333   GUUGUGCAACAAGUGGAUCCAU   354

2.5 PREDICTED: Zea mays uncharacterized LOC103653889 (LOC103653889), mRNA NA coding protein psRNATarget
XM_020541185.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:298   GUUGUGCAACAAGUGGAUCCAU   319

2.5 PREDICTED: Zea mays uncharacterized LOC103633880 (LOC103633880), mRNA NA coding protein psRNATarget
XM_008647839.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:290   GUUGUGCAACAAGUGGAUCCAU   311

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103627555), mRNA NA coding protein psRNATarget
XM_008647815.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:358   GUUGUGCAACAAGUGGAUCCAU   379

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103627522), mRNA NA coding protein psRNATarget
XM_008677224.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:299   GUUGUGCAACAAGUGGAUCCAU   320

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103651573), mRNA NA coding protein psRNATarget
XM_008657381.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:293   GUUGUGCAACAAGUGGAUCCAU   314

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103634789), mRNA NA coding protein psRNATarget
XM_008667136.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:299   GUUGUGCAACAAGUGGAUCCAU   320

2.5 PREDICTED: Zea mays uncharacterized LOC103643966 (LOC103643966), mRNA NA coding protein psRNATarget
XM_008657916.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:299   GUUGUGCAACAAGUGGAUCCAU   320

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103635474), mRNA NA coding protein psRNATarget
XM_020539744.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:329   GUUGUGCAACAAGUGGAUCCAU   350

2.5 PREDICTED: Zea mays uncharacterized LOC109940305 (LOC109940305), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539745.1
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:376   GUUGUGCAACAAGUGGAUCCAU   397

2.5 PREDICTED: Zea mays uncharacterized LOC109940305 (LOC109940305), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672728.2
ncRNA:22   UGACACGUAGUUCAUCUAGGUA   1
  ==||||||*|||||=|||||||
targets:311   GUUGUGCAACAAGUGGAUCCAU   332

2.5 PREDICTED: Zea mays protein ALP1-like (LOC103648235), mRNA NA coding protein psRNATarget
EZ517147.1
ncRNA:22   UGACACG-UAGUUCAUCUAGGUA   1
  **||||=-|||||||||||||||
targets:87   CAUGUGUGAUCAAGUAGAUCCAU   109

3.0 TSA: Zea mays cultivar W22 CL552Contig1.betc, mRNA sequence NA coding protein psRNATarget
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