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BaseInfo

ncRNA ID novel_zma_miR6382
Species Zea mays
Class miRNA
Genome position Chr1:187068856-187068914 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - GAUCUCUGGGAGAGUGGUGUCCGG - 24
Stem-loop(if miRNA) --C          CAA   -    UG GAA
   GAUAUUACUC   UCA AGAU  A   C
   ||||||||||   ||| ||||  |   U
   CUGUGGUGAG   GGU UCUA  U   U
GGC          -AG   C    GU AGC
Stem-loop sequence CGAUAUUACUCCAAUCAAGAUUGAGAACUUCGAUUGAUCUCUGGGAGAGUGGUGUCCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ101219.1
ncRNA:24   GGCCUGUGGUGAGAGGGUCUCUAG   1
  ||||||||||||||||*|||||||
targets:47   CCGGACACCACUCUCCAAGAGAUC   70

1.5 TSA: Zea mays contig36875, mRNA sequence NA coding protein psRNATarget
EU940994.1
ncRNA:24   GGCCUGUGGUGAGAGGGUCUCUAG   1
  ||*||||||||||||=||||||||
targets:797   CCAGACACCACUCUCUCAGAGAUC   820

1.5 Zea mays clone 1235065 mRNA sequence NA coding protein psRNATarget