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BaseInfo

ncRNA ID	novel_zma_miR6355
Species	Zea mays
Class	miRNA
Genome position	Chr9:33418897-33419011 [-]
Reference genome	RefGen_v4
Source	SRR2647385
Length	22
Mature sequence(if miRNA)	1 - AUCCCGGAUCACCAAAUCAGCC - 22
Stem-loop(if miRNA)	--            - AAG                        A             GA   CUGAUUUGGUGA C   GGGAUCCCGGGAGGAUUGGAGGGG UUGAGGGGGAAAU  A   |||||||||||| |   |||||||||||||||||||||||| |||||||||||||   GACUAAACCACU G   CCCUAGGGCCCUCCUAAUCUCCCC AACUCCCCCUUUA  C CC            A --G                        A             AU
Stem-loop sequence	CUGAUUUGGUGACAAGGGGAUCCCGGGAGGAUUGGAGGGGAUUGAGGGGGAAAUGAACUAAUUUCCCCCUCAAACCCCUCUAAUCCUCCCGGGAUCCCGGAUCACCAAAUCAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170445.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||||||||||||||||*||||| targets:17   GGCUGAUUUGGUGAUCAGGGAU   38 Target Full Sequence	1.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||||||||||||||||*||||| targets:17   GGCUGAUUUGGUGAUCAGGGAU   38 Target Full Sequence	1.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
HI409984.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||||||||||||||||*||||| targets:17   GGCUGAUUUGGUGAUCAGGGAU   38 Target Full Sequence	1.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||||||||||||||*||||||| targets:233   GGCUGAUUUGGUGACCCGGGAU   254 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
BT067503.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||||||||||||||||*||||| targets:918   GGCUGAUUUGGUGAUCAGGGAU   939 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||||||||||||||||*||||| targets:918   GGCUGAUUUGGUGAUCAGGGAU   939 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||=|||||||||||*||||||| targets:14   GGUUGAUUUGGUGACCCGGGAU   35 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
HI409663.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:3   AGCUGAUUUGGUGACCCGGGAU   24 Target Full Sequence	1.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:3   AGCUGAUUUGGUGACCCGGGAU   24 Target Full Sequence	1.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:3   AGCUGAUUUGGUGACCCGGGAU   24 Target Full Sequence	1.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
EU961132.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:757   AGCUGAUUUGGUGACCCGGGAU   778 Target Full Sequence	1.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:796   AGCUGAUUUGGUGACCCGGGAU   817 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:801   AGCUGAUUUGGUGACCCGGGAU   822 Target Full Sequence	1.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:801   AGCUGAUUUGGUGACCCGGGAU   822 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU973567.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||||||||*||||||| targets:21   AGCUGAUUUGGUGACCCGGGAU   42 Target Full Sequence	1.5	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
HI402947.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||*|||||||||||||*||||| targets:10   GGAUGAUUUGGUGAUCGGGGAU   31 Target Full Sequence	1.5	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
JB163408.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||*|||||||||||||*||||| targets:10   GGAUGAUUUGGUGAUCGGGGAU   31 Target Full Sequence	1.5	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235077.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   ||*|||||||||||||*||||| targets:10   GGAUGAUUUGGUGAUCGGGGAU   31 Target Full Sequence	1.5	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
AY105859.1	ncRNA:22   CCGACUAAACCACUAGGCCCUA   1   *|||||||*|||||*||||||| targets:1114   AGCUGAUUGGGUGACCCGGGAU   1135 Target Full Sequence	2.5	Zea mays PCO136287 mRNA sequence	NA	coding protein	psRNATarget