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BaseInfo

ncRNA ID	novel_zma_miR6354
Species	Zea mays
Class	miRNA
Genome position	Chr9:42703262-42703482 [-]
Reference genome	RefGen_v4
Source	SRR2647385;SRR1583941
Length	24
Mature sequence(if miRNA)	198 - AAAUGAUCUCCAGUUUUUACGCAG - 221
Stem-loop(if miRNA)	--         C                                   C                 G   U  A          A     A   -------G        --G      AAAUGAUCU CAGUUUUUACGCAGACCUUCUCUUAGCUAAAUUAA AUAUAUAAAUAUUUUCA AAU UU UGAGAACUUU AAUCU GAA        UAUAUAAA   UUCU   ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |||||||||| ||||| |||        ||||||||   |||G   UUUACUAGA GUUAAAAAUGUGUUUGGAAGAGAAUCGAUUUAAUU UAUGUGUUUAUAAAAGU UUA AA ACUCUUGAAA UUAGA CUU        AUGUAUUU   AAGA AU         A                                   A                 A   U  A          C     -   GGUAUUAA        AUA
Stem-loop sequence	AAAUGAUCUCCAGUUUUUACGCAGACCUUCUCUUAGCUAAAUUAACAUAUAUAAAUAUUUUCAGAAUUUUAUGAGAACUUUAAAUCUAGAAGUAUAUAAAGUUCUGAGAAAUAUUUAUGUAAAUUAUGGUUCAGAUUCAAAGUUCUCAAAAUAUUAUGAAAAUAUUUGUGUAUAUUAAUUUAGCUAAGAGAAGGUUUGUGUAAAAAUUGAAGAUCAUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001148134.2	ncRNA:24   GACGCAUUUUUGACCUCUAGUAAA   1   |*****=|=||||||||||||||| targets:1060   CAAAAGGAGAACUGGAGAUCAUUU   1083 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273724 (LOC100273724), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT065987.1	ncRNA:24   GACGCAUUUUUGACCUCUAGUAAA   1   |*****=|=||||||||||||||| targets:1060   CAAAAGGAGAACUGGAGAUCAUUU   1083 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0134K08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254867.1	ncRNA:24   GACGCAUUUUUGACCUCUAGUAAA   1   |*****=|=||||||||||||||| targets:1059   CAAAAGGAGAACUGGAGAUCAUUU   1082 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273724 (LOC100273724), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU972033.1	ncRNA:24   GACGCAUUUUUGACCUCUAGUAAA   1   |*****=|=||||||||||||||| targets:1059   CAAAAGGAGAACUGGAGAUCAUUU   1082 Target Full Sequence	3.0	Zea mays clone 373638 choline-phosphate cytidylyltransferase B mRNA, complete cds	NA	coding protein	psRNATarget
BT041705.1	ncRNA:24   GACGCAUUUUUGACCUCUAGUAAA   1   |*****=|=||||||||||||||| targets:1141   CAAAAGGAGAACUGGAGAUCAUUU   1164 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0034P15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551375.1	ncRNA:24   GACGCAUUUUUGACCUCUAGUAAA   1   |*****=|=||||||||||||||| targets:1232   CAAAAGGAGAACUGGAGAUCAUUU   1255 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273724 (LOC100273724), transcript variant X1, mRNA	NA	coding protein	psRNATarget