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BaseInfo

ncRNA ID novel_zma_miR6342
Species Zea mays
Class miRNA
Genome position Chr9:11886645-11886710 [+]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - GGAGGAUUGGAGAGGAUUGAGGGG - 24
Stem-loop(if miRNA) --  A    UG   A                AA
  GG GGAU  GAG GGAUUGAGGGGGAAAU  A
  || ||||  ||| ||||||||||||||||
  CC CCUA  CUC CUUAACUCCCCCUUUA  C
GC  C    GU   C                AU
Stem-loop sequence GGAGGAUUGGAGAGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUUCCCUCUGAUCCCCCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166853.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  ||||||||||||||||=|||||||
targets:52   CCCCUCAAUCCUCUCCGAUCCUCC   75

1.5 Sequence 4517 from Patent EP2559767 NA coding protein psRNATarget
HI406392.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  ||||||||||||||||=|||||||
targets:52   CCCCUCAAUCCUCUCCGAUCCUCC   75

1.5 Sequence 4517 from Patent EP2074227 NA coding protein psRNATarget
LQ238522.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  ||||||||||||||||=|||||||
targets:52   CCCCUCAAUCCUCUCCGAUCCUCC   75

1.5 Sequence 4517 from Patent EP2985353 NA coding protein psRNATarget
NM_001352049.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  ||||||||||||||||=|||||||
targets:551   CCCCUCAAUCCUCUCCGAUCCUCC   574

1.5 Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA NA coding protein psRNATarget
XM_020547779.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  ||||||||||||||||=|||||||
targets:579   CCCCUCAAUCCUCUCCGAUCCUCC   602

1.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547780.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  ||||||||||||||||=|||||||
targets:581   CCCCUCAAUCCUCUCCGAUCCUCC   604

1.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA NA coding protein psRNATarget
HI403493.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |||||||||||*||||||||||||
targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57

1.5 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
JB163954.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |||||||||||*||||||||||||
targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57

1.5 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |||||||||||*||||||||||||
targets:34   CCCCUCAAUCCCCUCCAAUCCUCC   57

1.5 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
XM_020539542.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |=|||||||=||||||||||=|||
targets:134   CUCCUCAAUUCUCUCCAAUCUUCC   157

2.5 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008651348.2
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |=|||||||=||||||||||=|||
targets:134   CUCCUCAAUUCUCUCCAAUCUUCC   157

2.5 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539541.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |=|||||||=||||||||||=|||
targets:134   CUCCUCAAUUCUCUCCAAUCUUCC   157

2.5 PREDICTED: Zea mays ribonuclease P protein subunit p29-like (LOC103630287), transcript variant X6, mRNA NA coding protein psRNATarget
BT088155.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  =|=||||||||*||||||||||||
targets:1465   UCUCUCAAUCCCCUCCAAUCCUCC   1488

1.5 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EZ055746.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |*|||||||||*||||||||||||
targets:77   CACCUCAAUCCCCUCCAAUCCUCC   100

1.5 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
AY110351.1
ncRNA:24   GGGGAGUUAGGAGAGGUUAGGAGG   1
  |*|||||||||*||||||||||||
targets:43   CACCUCAAUCCCCUCCAAUCCUCC   66

1.5 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
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