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BaseInfo

ncRNA ID	novel_zma_miR6331
Species	Zea mays
Class	miRNA
Genome position	Chr8:55877397-55877498 [+]
Reference genome	RefGen_v4
Source	SRR2647385
Length	21
Mature sequence(if miRNA)	82 - CGGUGCUGAGGUUGAUGACCU - 102
Stem-loop(if miRNA)	--A      U     U       G   -    AGUCG  U  G  G -    U    UCGUCA CCUCA CAUUGUC UAC CCAG     UC GG UC U CACC C    |||||| ||||| ||||||| ||| ||||     || || || | ||||    AGUAGU GGAGU GUGGCGG AUG GGUC     AG UC AG A GUGG C UCC      U     C       -   U    -GGUA  U  G  G C    G
Stem-loop sequence	AUCGUCAUCCUCAUCAUUGUCGUACCCAGAGUCGUCUGGGUCGUCACCUCCGGGUGCAGGAGCUUGAAUGGCUGGUGUAGGCGGUGCUGAGGUUGAUGACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542929.1	ncRNA:21   UCCAGUAGUUGGAGUCGUGGC   1   ||||||||||||||=|||||| targets:625   AGGUCAUCAACCUCGGCACCG   645 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109941719 (LOC109941719), mRNA	NA	coding protein	psRNATarget
XM_008645577.1	ncRNA:21   UCCAGUAGUUGGAGUCGUGGC   1   *|**|=||||||||||||||| targets:1148   CGCCCGUCAACCUCAGCACCG   1168 Target Full Sequence	3.0	PREDICTED: Zea mays anther-specific proline-rich protein APG (LOC100285073), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042701.1	ncRNA:21   UCCAGUAGUUGGAGUCGUGGC   1   *|**|=||||||||||||||| targets:1116   CGCCCGUCAACCUCAGCACCG   1136 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0014E05 mRNA, complete cds	NA	coding protein	psRNATarget
EU970765.1	ncRNA:21   UCCAGUAGUUGGAGUCGUGGC   1   *|**|=||||||||||||||| targets:1180   CGCCCGUCAACCUCAGCACCG   1200 Target Full Sequence	3.0	Zea mays clone 350332 anther-specific proline-rich protein APG precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157968.1	ncRNA:21   UCCAGUAGUUGGAGUCGUGGC   1   *|**|=||||||||||||||| targets:1180   CGCCCGUCAACCUCAGCACCG   1200 Target Full Sequence	3.0	Zea mays anther-specific proline-rich protein APG (LOC100285073), mRNA	NA	coding protein	psRNATarget