Search result

BaseInfo

ncRNA ID	novel_zma_miR6315
Species	Zea mays
Class	miRNA
Genome position	Chr8:135662552-135662610 [-]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	36 - ACAAAGAGCUCUUUGCCGAGUGUC - 59
Stem-loop(if miRNA)	--ACA    -                CAAA      AAGA GCUCUUUGCCGAGUGU    A      |||| ||||||||||||||||      UUCU CGAGAAAUGGCUCACA    A GCCGC    U                AAAU
Stem-loop sequence	ACAAAGAGCUCUUUGCCGAGUGUCAAAAAUAAAACACUCGGUAAAGAGCUUCUUCGCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406693.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |||||||||||||||||||||||* targets:52   GACACUCGGCAAAGAGCUCUUUGC   75 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   *||||||||||||||||||||||* targets:92   AACACUCGGCAAAGAGCUCUUUGC   115 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |||||||||||||||||||||||* targets:52   GACACUCGGCAAAGAGCUCUUUGC   75 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   *||||||||||||||||||||||* targets:92   AACACUCGGCAAAGAGCUCUUUGC   115 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |||||||||||||||||||||||* targets:52   GACACUCGGCAAAGAGCUCUUUGC   75 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   *||||||||||||||||||||||* targets:92   AACACUCGGCAAAGAGCUCUUUGC   115 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543430.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |=|||||||||||||||||||||* targets:1161   GGCACUCGGCAAAGAGCUCUUUGC   1184 Target Full Sequence	1.0	PREDICTED: Zea mays protein enabled homolog (LOC103636633), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   *||||||||||||||||||||||* targets:1972   AACACUCGGCAAAGAGCUCUUUGC   1995 Target Full Sequence	1.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   *||||||||||||||||||||||* targets:1972   AACACUCGGCAAAGAGCUCUUUGC   1995 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
HI406967.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |*|*||||||||||*||||||||* targets:39   GCCUCUCGGCAAAGCGCUCUUUGC   62 Target Full Sequence	2.5	Sequence 5092 from Patent EP2074227	NA	coding protein	psRNATarget
JB167428.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |*|*||||||||||*||||||||* targets:39   GCCUCUCGGCAAAGCGCUCUUUGC   62 Target Full Sequence	2.5	Sequence 5092 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239097.1	ncRNA:24   CUGUGAGCCGUUUCUCGAGAAACA   1   |*|*||||||||||*||||||||* targets:39   GCCUCUCGGCAAAGCGCUCUUUGC   62 Target Full Sequence	2.5	Sequence 5092 from Patent EP2985353	NA	coding protein	psRNATarget