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BaseInfo

ncRNA ID novel_zma_miR6314
Species Zea mays
Class miRNA
Genome position Chr8:137272841-137272998 [-]
Reference genome RefGen_v4
Source SRR2647385;SRR2647388;SRR2647467
Length 24
Mature sequence(if miRNA) 135 - CCGGCUGCAAACUAGGCUGUUUGC - 158
Stem-loop(if miRNA) --                                         U       C             CCACCAG     GU
  CCGGCUGCAAACUAGGCUGUUUGCAGCCCCUCACAAAAAGG GGAUAGG CCCACCUGCAGGU       AUAAC  U
  ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||       |||||
  GGCCGACGUUUGGUCCGACAAACGUCGGGGAGUGUUUUUCC CCUAUCC GGGUGGGCGUCCA       UGUUG  U
CG                                         U       A             UUUAUUA     AU
Stem-loop sequence CCGGCUGCAAACUAGGCUGUUUGCAGCCCCUCACAAAAAGGUGGAUAGGCCCCACCUGCAGGUCCACCAGAUAACGUUUUAGUUGUAUUAUUUACCUGCGGGUGGGACCUAUCCUCCUUUUUGUGAGGGGCUGCAAACAGCCUGGUUUGCAGCCGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ073016.1
ncRNA:24   CGUUUGUCGGAUCAAACGUCGGCC   1
  |||||||||||=||||||||||||
targets:57   GCAAACAGCCUGGUUUGCAGCCGG   80

1.5 TSA: Zea mays contig08653, mRNA sequence NA coding protein psRNATarget
EU968721.1
ncRNA:24   CGUUUGUCGGAUCAAACGUCGGCC   1
  *|||||||=||=||||||||||||
targets:1046   ACAAACAGUCUGGUUUGCAGCCGG   1069

2.5 Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds NA coding protein psRNATarget