Search result

BaseInfo

ncRNA ID	novel_zma_miR6311
Species	Zea mays
Class	miRNA
Genome position	Chr8:150428285-150428373 [-]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	1 - GCUCAGGAUCUAUAAAGUGACAGA - 24
Stem-loop(if miRNA)	----UG   G      GAA       A    UA    U  --GUG GG       GCU UGUAGA   UCUGAGU UUAU  GGAU AC     C  A       ||| ||||||   ||||||| ||||  |||| ||     |  G       UGA AUAUCU   GGACUCG GGUA  CCUG UG     G  G AGACAG   A      --A       G    --    U  AAAUA AA
Stem-loop sequence	UGGCUGUGUAGAGAAUCUGAGUAUUAUUAGGAUUACGUGCGGAGGAAGAUAAAGUUGUCCAUGGGGCUCAGGAUCUAUAAAGUGACAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ060395.1	ncRNA:24   AGACAGUGAAAUAUCUAGGACUCG   1   ||||||=|||||||||||||*||| targets:76   UCUGUCGCUUUAUAGAUCCUAAGC   99 Target Full Sequence	2.5	TSA: Zea mays contig61517, mRNA sequence	NA	coding protein	psRNATarget
EU963449.1	ncRNA:24   AGACAGUGAAAUAUCUAGGACUCG   1   ||*||||||||*|||||||||||| targets:635   UCCGUCACUUUCUAGAUCCUGAGC   658 Target Full Sequence	1.5	Zea mays clone 262668 mRNA sequence	NA	coding protein	psRNATarget
BT087362.1	ncRNA:24   AGACAGUGAAAUAUCUAGGACUCG   1   ||*||||||||*|||||||||||| targets:1128   UCCGUCACUUUCUAGAUCCUGAGC   1151 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0054C12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177007.2	ncRNA:24   AGACAGUGAAAUAUCUAGGACUCG   1   ||*||||||||*|||||||||||| targets:2355   UCCGUCACUUUCUAGAUCCUGAGC   2378 Target Full Sequence	1.5	Zea mays calcium dependent protein kinase4 (IDP2562), mRNA	NA	coding protein	psRNATarget
FJ805744.1	ncRNA:24   AGACAGUGAAAUAUCUAGGACUCG   1   ||*||||||||*|||||||||||| targets:2355   UCCGUCACUUUCUAGAUCCUGAGC   2378 Target Full Sequence	1.5	Zea mays CDPK protein (CK1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677133.2	ncRNA:24   AGACAGUGAAAUAUCUAGGACUCG   1   |=**|||||||*|||||||||||| targets:2213   UUCAUCACUUUCUAGAUCCUGAGC   2236 Target Full Sequence	1.5	PREDICTED: Zea mays phosphoglucomutase, chloroplastic (LOC103651489), mRNA	NA	coding protein	psRNATarget