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BaseInfo

ncRNA ID	novel_zma_miR6309
Species	Zea mays
Class	miRNA
Genome position	Chr1:231123942-231124027 [+]
Reference genome	RefGen_v4
Source	SRR2647385;SRR2647386;SRR2647389;SRR2647391
Length	23
Mature sequence(if miRNA)	1 - GGAUUUAAUCUCACCAUGUGAUU - 23
Stem-loop(if miRNA)	--    UU       C    U    GAGUG   C  A      C   GGAU  AAUCUCA CAUG GAUU     UUA AU UGGAUU A   ||||  ||||||| |||| ||||     ||| || |||||| C   UUUA  UUAGAGU GUAU CUAA     AAU UA AUCUAA C CA    -U       A    -    -AUUA   C  G      C
Stem-loop sequence	GGAUUUAAUCUCACCAUGUGAUUGAGUGUUACAUAUGGAUUCACCCAAUCUAGAUCUAAAUUAAAUCUAUGAUGAGAUUUAUUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001175191.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   ||||||||||||=|||||||||| targets:3542   AAUCACAUGGUGGGAUUAAAUCC   3564 Target Full Sequence	1.5	Zea mays putative RNA helicase family protein (LOC100382450), mRNA	NA	coding protein	psRNATarget
BT064393.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   ||||||||||||=|||||||||| targets:3542   AAUCACAUGGUGGGAUUAAAUCC   3564 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0165C21 mRNA, complete cds	NA	coding protein	psRNATarget
BT066966.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   ||||||||||||=|||||||||| targets:3353   AAUCACAUGGUGGGAUUAAAUCC   3375 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0125G04 mRNA, complete cds	NA	coding protein	psRNATarget
EU964841.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   |||||=|||||*||||||||||| targets:1490   AAUCAUAUGGUAAGAUUAAAUCC   1512 Target Full Sequence	2.5	Zea mays clone 281960 CHY1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156370.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   |||||=|||||*||||||||||| targets:1490   AAUCAUAUGGUAAGAUUAAAUCC   1512 Target Full Sequence	2.5	Zea mays CHY1 (LOC100283469), mRNA	NA	coding protein	psRNATarget
XM_008663755.2	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   |||||=|||||*||||||||||| targets:1502   AAUCAUAUGGUAAGAUUAAAUCC   1524 Target Full Sequence	2.5	PREDICTED: Zea mays CHY1 (LOC100283469), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI409566.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   ||||*|||||||=|||||||||| targets:51   AAUCCCAUGGUGGGAUUAAAUCC   73 Target Full Sequence	2.5	Sequence 7691 from Patent EP2074227	NA	coding protein	psRNATarget
JB170027.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   ||||*|||||||=|||||||||| targets:51   AAUCCCAUGGUGGGAUUAAAUCC   73 Target Full Sequence	2.5	Sequence 7691 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241696.1	ncRNA:23   UUAGUGUACCACUCUAAUUUAGG   1   ||||*|||||||=|||||||||| targets:51   AAUCCCAUGGUGGGAUUAAAUCC   73 Target Full Sequence	2.5	Sequence 7691 from Patent EP2985353	NA	coding protein	psRNATarget