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BaseInfo

ncRNA ID novel_zma_miR6306
Species Zea mays
Class miRNA
Genome position Chr8:170274425-170274496 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 49 - GGAUUUAGAGUGGUUCAGGCCGCU - 72
Stem-loop(if miRNA) --GGA       UG  U        --     CGUAA
     UUUAGAG  GU CAGGCCGC  UGGAG     U
     |||||||  || ||||||||  |||||
     GAGUUUC  UA GUUUGGUG  ACCUC     A
UUCGA       GU  U        UC     UUCCC
Stem-loop sequence GGAUUUAGAGUGGUUCAGGCCGCUGGAGCGUAAUACCCUUCUCCACUGUGGUUUGUAUUGCUUUGAGAGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU951262.1
ncRNA:24   UCGCCGGACUUGGUGAGAUUUAGG   1
  =|||||||||||||||||||*||=
targets:59   GGCGGCCUGAACCACUCUAACUCU   82

2.5 Zea mays clone 689732 mRNA sequence NA coding protein psRNATarget
EZ063125.1
ncRNA:24   UCGCCGGACUUGGUGAGAUUUAGG   1
  =|=||||*|||||||||||||||=
targets:41   GGUGGCCCGAACCACUCUAAAUCU   64

2.0 TSA: Zea mays contig64247, mRNA sequence NA coding protein psRNATarget
XM_020545234.1
ncRNA:24   UCGCCGGACUUGGUGAGAUUUAGG   1
  =||||||**|||||||||||||||
targets:5005   GGCGGCCCAAACCACUCUAAAUCC   5028

2.0 PREDICTED: Zea mays ABC transporter I family member 1-like (LOC103642079), transcript variant X2, mRNA NA coding protein psRNATarget