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BaseInfo

ncRNA ID	novel_zma_miR6299
Species	Zea mays
Class	miRNA
Genome position	Chr7:124956605-124956668 [+]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	1 - UAAUAUGUCUAGAUUAUAUAAUCU - 24
Stem-loop(if miRNA)	--    A                        A   UAAU UGUCUAGAUUAUAUAAUCUAACAA A   |||| ||||||||||||||||||||||||   AUUA ACAGAUCUAAUAUAUUAGGUUGUU A AU    G                        A
Stem-loop sequence	UAAUAUGUCUAGAUUAUAUAAUCUAACAAAAAAUUGUUGGAUUAUAUAAUCUAGACAGAUUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ107397.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   =|||||||||||=||||||||||| targets:32   GGAUUAUAUAAUUUAGACAUAUUA   55 Target Full Sequence	1.5	TSA: Zea mays contig43055, mRNA sequence	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   |||||||||||||||||||*|||| targets:2108   AGAUUAUAUAAUCUAGACAGAUUA   2131 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956611.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   |*||||||||||||=||||||||| targets:1624   AUAUUAUAUAAUCUGGACAUAUUA   1647 Target Full Sequence	1.5	Zea mays clone 1568093 mRNA sequence	NA	coding protein	psRNATarget
NM_001152270.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   |||||||||=|||||||||*|||| targets:1640   AGAUUAUAUGAUCUAGACAGAUUA   1663 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA	NA	coding protein	psRNATarget
BT053896.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   |||||||||=|||||||||*|||| targets:1640   AGAUUAUAUGAUCUAGACAGAUUA   1663 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547943.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   =*|||||||||||||||||*|||| targets:3414   GAAUUAUAUAAUCUAGACAGAUUA   3437 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   =*|||||||||||||||||*|||| targets:3399   GAAUUAUAUAAUCUAGACAGAUUA   3422 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   =*|||||||||||||||||*|||| targets:3270   GAAUUAUAUAAUCUAGACAGAUUA   3293 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   =*|||||||||||||||||*|||| targets:1285   GAAUUAUAUAAUCUAGACAGAUUA   1308 Target Full Sequence	1.5	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:24   UCUAAUAUAUUAGAUCUGUAUAAU   1   =*|||||||||||||||||*|||| targets:1285   GAAUUAUAUAAUCUAGACAGAUUA   1308 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget