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BaseInfo

ncRNA ID	novel_zma_miR6295
Species	Zea mays
Class	miRNA
Genome position	Chr8:100419743-100419809 [-]
Reference genome	RefGen_v4
Source	SRR1618883
Length	25
Mature sequence(if miRNA)	43 - AUAGAUCUUGGCGCCGACCCCCCUA - 67
Stem-loop(if miRNA)	-AU      -             -CCUA   GCA    AGAUCU UGGCGCCGACCCC     GCG   G    |||||| |||||||||||||     |||    UCUAGA ACCGCGGCUGGGG     UGC   A GGU      U             ACCUG   ACU
Stem-loop sequence	AUAGAUCUUGGCGCCGACCCCCCUAGCGGCAGAUCACGUGUCCAGGGGUCGGCGCCAUAGAUCUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU959730.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|||||*|||||||||||||||||| targets:1513   AAGGGGUGUCGGCGCCAAGAUCUAU   1537 Target Full Sequence	1.0	Zea mays clone 219696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149941.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|||||*|||||||||||||||||| targets:1513   AAGGGGUGUCGGCGCCAAGAUCUAU   1537 Target Full Sequence	1.0	Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC100276060), mRNA	NA	coding protein	psRNATarget
XM_020541155.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   |**|||||||||||||||||||||* targets:66   UCAGGGGGUCGGCGCCAAGAUCUAC   90 Target Full Sequence	1.0	PREDICTED: Zea mays basic proline-rich protein-like (LOC109940831), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   |**|||||||||||||||||||||* targets:66   UCAGGGGGUCGGCGCCAAGAUCUAC   90 Target Full Sequence	1.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   |**|||||||||||||||||||||* targets:66   UCAGGGGGUCGGCGCCAAGAUCUAC   90 Target Full Sequence	1.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   ****||||||||||||||||||||| targets:345   GUCAGGGGUCGGCGCCAAGAUCUAU   369 Target Full Sequence	0.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
XM_020544775.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   ****||||||||||=|||||||||| targets:138   CCAAGGGGUCGGCGUCAAGAUCUAU   162 Target Full Sequence	1.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
HI405982.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|||**|*||||||||||||||||| targets:141   CAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	1.0	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|||**|*||||||||||||||||| targets:141   CAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	1.0	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
JB166443.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|||**|*||||||||||||||||| targets:141   CAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	1.0	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242025.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   **|*|**|*|*|||||||||||||| targets:44   ACGAGAUGCCAGCGCCAAGAUCUAU   68 Target Full Sequence	3.0	Sequence 8020 from Patent EP2985353	NA	coding protein	psRNATarget
HI409895.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   **|*|**|*|*|||||||||||||| targets:44   ACGAGAUGCCAGCGCCAAGAUCUAU   68 Target Full Sequence	3.0	Sequence 8020 from Patent EP2074227	NA	coding protein	psRNATarget
JB170356.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   **|*|**|*|*|||||||||||||| targets:44   ACGAGAUGCCAGCGCCAAGAUCUAU   68 Target Full Sequence	3.0	Sequence 8020 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|**|*|*||||||||||||||||| targets:1833   CAUCGAGCUCGGCGCCAAGAUCUAU   1857 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|**|*|*||||||||||||||||| targets:1858   CAUCGAGCUCGGCGCCAAGAUCUAU   1882 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *|**|*|*||||||||||||||||| targets:1865   CAUCGAGCUCGGCGCCAAGAUCUAU   1889 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664820.2	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   *=******||||||||||||||||| targets:9   CGCCUACCUCGGCGCCAAGAUCUAU   33 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_008672912.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   |*****|*|||||||||||||||=| targets:365   UUCCUAGCUCGGCGCCAAGAUCUGU   389 Target Full Sequence	2.5	PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA	NA	coding protein	psRNATarget
XM_008652503.1	ncRNA:25   AUCCCCCCAGCCGCGGUUCUAGAUA   1   |*****|*|||||||||||||||=| targets:398   UUCCUAGCUCGGCGCCAAGAUCUGU   422 Target Full Sequence	2.5	PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA	NA	coding protein	psRNATarget