Search result

BaseInfo

ncRNA ID novel_zma_miR6283
Species Zea mays
Class miRNA
Genome position Chr8:152709466-152709642 [-]
Reference genome RefGen_v4
Source SRR1618883;SRR2647386;SRR2647387;SRR3341905;SRR5100255;SRR5105961;SRR5105963
Length 21
Mature sequence(if miRNA) 1 - UUGGACUGAAGGGUGCUCCCU - 21
Stem-loop(if miRNA) --A    U            CU UA       U         --CA      G   AC          AC         A   U  G AAG
   GAGC CUCUUCAGUCCA  C  AAAUGGC GUAGGGUUU    UUAGCU CCG  UCAUCCAUUC  CUGCCAAGA CCA GG C   C
   |||| ||||||||||||  |  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| ||| || |
   CUCG GGGAAGUCAGGU  G  UUUGUCG CAUCUCAAA    AAUCGA GGC  GGUGGGUGAG  GAUGGUUCU GGU CU G   G
UCC    U            UG CA       -         CUAA      G   GC          CC         -   -  G AUG
Stem-loop sequence AGAGCUCUCUUCAGUCCACUCUAAAAUGGCUGUAGGGUUUCAUUAGCUGCCGACUCAUCCAUUCACCUGCCAAGAACCAUGGGCAAGCGGUAGGUCUGGUCUUGGUAGCCGAGUGGGUGGCGCGGGAGCUAAAAUCAAACUCUACGCUGUUUACGGUUGGACUGAAGGGUGCUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB169126.1
ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1
  |||||||||||||||||||||
targets:7   AGGGAGCACCCUUCAGUCCAA   27

0.0 Sequence 6790 from Patent EP2559767 NA coding protein psRNATarget
HI408665.1
ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1
  |||||||||||||||||||||
targets:7   AGGGAGCACCCUUCAGUCCAA   27

0.0 Sequence 6790 from Patent EP2074227 NA coding protein psRNATarget
LQ240795.1
ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1
  |||||||||||||||||||||
targets:7   AGGGAGCACCCUUCAGUCCAA   27

0.0 Sequence 6790 from Patent EP2985353 NA coding protein psRNATarget
XM_008655165.2
ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1
  **||=||||*|||||||||||
targets:1045   CCGGGGCACACUUCAGUCCAA   1065

2.5 PREDICTED: Zea mays transcription factor PCF8 (LOC103633471), mRNA NA coding protein psRNATarget
XM_008661531.2
ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1
  =**||||*|||||||||||||
targets:932   GUCGAGCUCCCUUCAGUCCAA   952

2.0 PREDICTED: Zea mays myb-related protein Pp2 (LOC103638691), mRNA NA coding protein psRNATarget
EU972820.1
ncRNA:21   UCCCUCGUGGGAAGUCAGGUU   1
  =**||||*|||||||||||||
targets:925   GUCGAGCUCCCUUCAGUCCAA   945

2.0 Zea mays clone 388684 mRNA sequence NA coding protein psRNATarget