ncRNA ID | novel_zma_miR6283 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr8:152709466-152709642 [-] |
Reference genome | RefGen_v4 |
Source | SRR1618883;SRR2647386;SRR2647387;SRR3341905;SRR5100255;SRR5105961;SRR5105963 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUGGACUGAAGGGUGCUCCCU - 21 |
Stem-loop(if miRNA) |
--A    U            CU UA       U         --CA      G   AC          AC         A   U  G AAG    GAGC CUCUUCAGUCCA  C  AAAUGGC GUAGGGUUU    UUAGCU CCG  UCAUCCAUUC  CUGCCAAGA CCA GG C   C    |||| ||||||||||||  |  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| ||| || |    CUCG GGGAAGUCAGGU  G  UUUGUCG CAUCUCAAA    AAUCGA GGC  GGUGGGUGAG  GAUGGUUCU GGU CU G   G UCC    U            UG CA       -         CUAA      G   GC          CC         -   -  G AUG |
Stem-loop sequence | AGAGCUCUCUUCAGUCCACUCUAAAAUGGCUGUAGGGUUUCAUUAGCUGCCGACUCAUCCAUUCACCUGCCAAGAACCAUGGGCAAGCGGUAGGUCUGGUCUUGGUAGCCGAGUGGGUGGCGCGGGAGCUAAAAUCAAACUCUACGCUGUUUACGGUUGGACUGAAGGGUGCUCCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
JB169126.1 |
|
0.0 | Sequence 6790 from Patent EP2559767 | NA | coding protein | psRNATarget | |||||||||
HI408665.1 |
|
0.0 | Sequence 6790 from Patent EP2074227 | NA | coding protein | psRNATarget | |||||||||
LQ240795.1 |
|
0.0 | Sequence 6790 from Patent EP2985353 | NA | coding protein | psRNATarget | |||||||||
XM_008655165.2 |
|
2.5 | PREDICTED: Zea mays transcription factor PCF8 (LOC103633471), mRNA | NA | coding protein | psRNATarget | |||||||||
XM_008661531.2 |
|
2.0 | PREDICTED: Zea mays myb-related protein Pp2 (LOC103638691), mRNA | NA | coding protein | psRNATarget | |||||||||
EU972820.1 |
|
2.0 | Zea mays clone 388684 mRNA sequence | NA | coding protein | psRNATarget |