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BaseInfo

ncRNA ID	novel_zma_miR6277
Species	Zea mays
Class	miRNA
Genome position	Chr7:130800257-130800385 [+]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	1 - UUUGCUGGUGUGCUCAUUUUUACC - 24
Stem-loop(if miRNA)	-                  U           CA    -G  G   A     AC    ---A   UC  UUUGCUGGUGUGCUCAUU UUACCCUUAGU  UGUU  UU CUC GUUUU  CCUU    UGU  U  |||||||||||||||||| |||||||||||  ||||  || ||| |||||  ||||    |||  AAACGACCACACGAGUAA AAUGGGAAUCA  ACAA  AA GAG CAAAA  GGAA    ACG  A A                  C           AC    AA  G   C     AA    GAUC   AU
Stem-loop sequence	UUUGCUGGUGUGCUCAUUUUUACCCUUAGUCAUGUUGUUGCUCAGUUUUACCCUUAUGUUCUAUAGCACUAGAAGGAAAAAACCGAGGAAAAAACACAACUAAGGGUAACAAUGAGCACACCAGCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062450.2	ncRNA:24   CCAUUUUUACUCGUGUGGUCGUUU   1   |||||||||||||||||||||||| targets:462   GGUAAAAAUGAGCACACCAGCAAA   485 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0299A08 mRNA, complete cds	NA	coding protein	psRNATarget
BT061928.1	ncRNA:24   CCAUUUUUACUCGUGUGGUCGUUU   1   |||||||||||||||||||||||| targets:562   GGUAAAAAUGAGCACACCAGCAAA   585 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681845.2	ncRNA:24   CC-AUUUUUACUCGUGUGGUCGUUU   1   ||-||||||||||*||||||||||| targets:333   GGAUAAAAAUGAGGACACCAGCAAA   357 Target Full Sequence	1.5	PREDICTED: Zea mays CASP-like protein 1U4 (LOC103655026), mRNA	NA	coding protein	psRNATarget
XM_008679472.2	ncRNA:24   CCAUUUUUACUCGUGUGGUCGUUU   1   |||||||||*|||||||||*|||| targets:2672   GGUAAAAAUAAGCACACCAACAAA   2695 Target Full Sequence	2.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679473.2	ncRNA:24   CCAUUUUUACUCGUGUGGUCGUUU   1   |||||||||*|||||||||*|||| targets:2875   GGUAAAAAUAAGCACACCAACAAA   2898 Target Full Sequence	2.5	PREDICTED: Zea mays Tetratricopeptide-like helical (LOC100384484), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT086095.2	ncRNA:24   CCAUUUUUA--CUCGUGUGGUCGUUU   1   *****||||--||||||||||||||| targets:1118   CACCCAAAUUUGAGCACACCAGCAAA   1143 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0116B19 mRNA, complete cds	NA	coding protein	psRNATarget