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BaseInfo

ncRNA ID	osa-miRf10224-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - GGCUUCUUCAAGAAGGCCAG - NA
Stem-loop(if miRNA)	G G  G C   G  GCG          A  U   G  --  C     AUCGAGA   GG GCAUCGAGAGCG GCAG U GC G GCC UC   GAGGAGGCCG GC UGG GC  GG AGAAG       UCC  C            A |||| | || | ||| ||   |||||||||| || ||| ||  || |||||       |||  | UGUC A CG C CGG AG   CUUCUUCGGC CG GCC CG  CC UCUUC       UGU  G            G     G G  A -   A  -AA          -  U   G  AA  -     ------G   -- GACUGCACGGAG
Stem-loop sequence	GCAGGUGGCGGCGCCGUCGCGGAGGAGGCCGAGCUUGGGGCGGCAGAAGAUCGAGAUCCGGCGCAUCGAGAGCGAGGAGGCACGUCAGGUGUGCUUCUCCAAGCGCCGUGCCGGCUUCUUCAAGAAGGCCAGCGAGCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK065606.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   |||||||||||||||||||| targets:649   CUGGCCUUCUUGAAGAAGCC   668 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013034A05, full insert sequence	NA	coding protein	psRNATarget
XM_015792106.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   |||||||||||||||||||| targets:677   CUGGCCUUCUUGAAGAAGCC   696 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group peptide chain release factor PrfB1, chloroplastic (LOC4343528), transcript variant X1, mRNA	peptide chain release factor PrfB1, chloroplastic(LOC4343528)	coding protein	psRNATarget
XM_015792107.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   |||||||||||||||||||| targets:692   CUGGCCUUCUUGAAGAAGCC   711 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group peptide chain release factor PrfB1, chloroplastic (LOC4343528), transcript variant X2, mRNA	peptide chain release factor PrfB1, chloroplastic(LOC4343528)	coding protein	psRNATarget
AK121518.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   ||||=|||||*||||||||| targets:4009   CUGGUCUUCUGGAAGAAGCC   4028 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033027G17, full insert sequence	NA	coding protein	psRNATarget
AY224534.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   ||||=|||||*||||||||| targets:5441   CUGGUCUUCUGGAAGAAGCC   5460 Target Full Sequence	2.5	Oryza sativa (japonica cultivar-group) isolate 23272 unknown mRNA	NA	coding protein	psRNATarget
XM_015794523.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   ||||=|||||*||||||||| targets:5850   CUGGUCUUCUGGAAGAAGCC   5869 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group thyroid adenoma-associated protein homolog (LOC4344765), mRNA	thyroid adenoma-associated protein homolog(LOC4344765)	coding protein	psRNATarget
XM_015791754.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   *|||=*|||||||||||||| targets:3573   AUGGUGUUCUUGAAGAAGCC   3592 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mediator of RNA polymerase II transcription subunit 33A (LOC4342710), transcript variant X2, mRNA	mediator of RNA polymerase II transcription subunit 33A(LOC4342710)	coding protein	psRNATarget
XM_015791753.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   *|||=*|||||||||||||| targets:4293   AUGGUGUUCUUGAAGAAGCC   4312 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mediator of RNA polymerase II transcription subunit 33A (LOC4342710), transcript variant X1, mRNA	mediator of RNA polymerase II transcription subunit 33A(LOC4342710)	coding protein	psRNATarget
AK108525.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   ||||||**|||||||||||| targets:733   CUGGCCAGCUUGAAGAAGCC   752 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-144-B08, full insert sequence	NA	coding protein	psRNATarget
CT833782.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   |||*|*|||||||||||||= targets:249   CUGACGUUCUUGAAGAAGCU   268 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN045G22, full insert sequence	NA	coding protein	psRNATarget
AK110513.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   *|||*||||||||||||*|| targets:1232   GUGGACUUCUUGAAGAAACC   1251 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-167-G06, full insert sequence	NA	coding protein	psRNATarget
XM_015787904.1	ncRNA:20   GACCGGAAGAACUUCUUCGG   1   ||||*|*||||||||||||* targets:2693   CUGGACGUCUUGAAGAAGCA   2712 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At5g65560 (LOC4341903), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At5g65560(LOC4341903)	coding protein	psRNATarget