Search result

BaseInfo

ncRNA ID	novel_zma_miR6263
Species	Zea mays
Class	miRNA
Genome position	Chr6:88735536-88735639 [-]
Reference genome	RefGen_v4
Source	SRR2647385
Length	23
Mature sequence(if miRNA)	82 - AUAUAAUCUACAGUGCAAAAUGU - 104
Stem-loop(if miRNA)	--      UCU  A          -U     ---   GACCACAUGAGUAAACUG   AUAUAA   AC GUGCAAAAUG  GUUUU   UGU                  C   ||||||   || ||||||||||  |||||   |||   UAUAUU   UG UACGUUUUGC  CAAAA   AUG                  U AU      --U  C          CC     UCU   GUAUGUCCACAUUACAUG
Stem-loop sequence	AUAUAAUCUACAGUGCAAAAUGUGUUUUUGUGACCACAUGAGUAAACUGCUGUACAUUACACCUGUAUGGUAUCUAAAACCCCGUUUUGCAUCGUUUUAUAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973003.1	ncRNA:23   UGUAAAACGUGACAUCUAAUAUA   1   |||||||||||||||||||=||| targets:1182   ACAUUUUGCACUGUAGAUUGUAU   1204 Target Full Sequence	1.5	Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158478.1	ncRNA:23   UGUAAAACGUGACAUCUAAUAUA   1   |||||||||||||||||||=||| targets:1182   ACAUUUUGCACUGUAGAUUGUAU   1204 Target Full Sequence	1.5	Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA	NA	coding protein	psRNATarget
NM_001111823.1	ncRNA:23   UGU----AAAACGUGACAUCUAAUAUA   1   |||----|||||=||||||||||=||| targets:7579   ACACUGUUUUUGUACUGUAGAUUGUAU   7605 Target Full Sequence	2.5	Zea mays uncharacterized LOC542211 (cl3114_1(600)), mRNA	NA	coding protein	psRNATarget
AY894697.1	ncRNA:23   UGU----AAAACGUGACAUCUAAUAUA   1   |||----|||||=||||||||||=||| targets:7579   ACACUGUUUUUGUACUGUAGAUUGUAU   7605 Target Full Sequence	2.5	Zea mays target of rapamycin mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675425.2	ncRNA:23   UGUAAAACGUGACAUCUAAUAUA   1   =||*|||*||||||||||||*|| targets:2225   GCACUUUACACUGUAGAUUACAU   2247 Target Full Sequence	2.5	PREDICTED: Zea mays phosphoenolpyruvate/phosphate translocator 3, chloroplastic (LOC103649694), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675426.2	ncRNA:23   UGUAAAACGUGACAUCUAAUAUA   1   =||*|||*||||||||||||*|| targets:2153   GCACUUUACACUGUAGAUUACAU   2175 Target Full Sequence	2.5	PREDICTED: Zea mays phosphoenolpyruvate/phosphate translocator 3, chloroplastic (LOC103649694), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008675427.2	ncRNA:23   UGUAAAACGUGACAUCUAAUAUA   1   =||*|||*||||||||||||*|| targets:2078   GCACUUUACACUGUAGAUUACAU   2100 Target Full Sequence	2.5	PREDICTED: Zea mays phosphoenolpyruvate/phosphate translocator 3, chloroplastic (LOC103649694), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ082507.1	ncRNA:23   UGUAAAACGUGACAUCUAAUAUA   1   *|=*||||||||||||||||*|* targets:68   UCGAUUUGCACUGUAGAUUACAC   90 Target Full Sequence	2.5	TSA: Zea mays contig18150, mRNA sequence	NA	coding protein	psRNATarget