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BaseInfo

ncRNA ID novel_zma_miR6260
Species Zea mays
Class miRNA
Genome position Chr6:128766278-128766415 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 115 - GUUUUGUUUGGGUACUCUAGUAUU - 138
Stem-loop(if miRNA) --   UU                  UU  C                                   A   
  GUU  GUUUGGGUACUCUAGUAU  AC UUAGUCCACAUGUGUUGAGGUGGAUUGGGGUGUAA UUAG
  |||  ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| |||U
  CGA  CAAACCCAUGAGAUCAUA  UG AAUUAGGUGUAUAUAAUUCCACCUAAUCCCACAUU AAUU
CC   -U                  UC  A                                   G   
Stem-loop sequence GUUUUGUUUGGGUACUCUAGUAUUUACCUUAGUCCACAUGUGUUGAGGUGGAUUGGGGUGUAAAUUAGUUUAAGUUACACCCUAAUCCACCUUAAUAUAUGUGGAUUAAAGUCUAUACUAGAGUACCCAAACUAGCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008650840.2
ncRNA:24   UUAUGAUCUCAUGGGUUUGUUUUG   1
  ||||||||||||||||||||||||
targets:3429   AAUACUAGAGUACCCAAACAAAAC   3452

0.0 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget
XM_008650840.2
ncRNA:24   UUAUGAUCUCAUGGGUUUGUUUUG   1
  ||||=|||||||||||||||||||
targets:3547   AAUAUUAGAGUACCCAAACAAAAC   3570

0.0 PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA NA coding protein psRNATarget