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BaseInfo

ncRNA ID	novel_zma_miR6251
Species	Zea mays
Class	miRNA
Genome position	Chr8:13145086-13145135 [+]
Reference genome	RefGen_v4
Source	SRR1618883;SRR5099742
Length	22
Mature sequence(if miRNA)	29 - UACGGUGUAGUAUAUUUGAGAC - 50
Stem-loop(if miRNA)	--     AC           G C  A   CUCAA  AUAUAUUAUAC G AG C   |||||  ||||||||||| | ||   GAGUU  UAUAUGAUGUG C UC C CA     --           G A  A
Stem-loop sequence	CUCAAACAUAUAUUAUACGGCAGACCACUACGGUGUAGUAUAUUUGAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU952101.1	ncRNA:22   CA--GAGUUUAUAUGAUGUGGCAU   1   ||--|||||||||||||||||||| targets:152   GUGACUCAAAUAUACUACACCGUA   175 Target Full Sequence	0.0	Zea mays clone 1164740 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061162.2	ncRNA:22   CA--GAGUUUAUAUGAUGUGGCAU   1   ||--|||||||||||||||||||| targets:1594   GUGACUCAAAUAUACUACACCGUA   1617 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0117D02 mRNA, complete cds	NA	coding protein	psRNATarget
HI402948.1	ncRNA:22   CA--GAGUUUAUAUGAUGUGGCAU   1   ||--|||||||||||||||||||| targets:82   GUGCCUCAAAUAUACUACACCGUA   105 Target Full Sequence	0.0	Sequence 1073 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235078.1	ncRNA:22   CA--GAGUUUAUAUGAUGUGGCAU   1   ||--|||||||||||||||||||| targets:82   GUGCCUCAAAUAUACUACACCGUA   105 Target Full Sequence	0.0	Sequence 1073 from Patent EP2985353	NA	coding protein	psRNATarget
JB163409.1	ncRNA:22   CA--GAGUUUAUAUGAUGUGGCAU   1   ||--|||||||||||||||||||| targets:82   GUGCCUCAAAUAUACUACACCGUA   105 Target Full Sequence	0.0	Sequence 1073 from Patent EP2559767	NA	coding protein	psRNATarget
AY106673.1	ncRNA:22   CAGAGUUUAUAUGAUGUGGCAU   1   |*|||||||||||||||||||| targets:1428   GCCUCAAAUAUACUACACCGUA   1449 Target Full Sequence	0.0	Zea mays PCO111223 mRNA sequence	NA	coding protein	psRNATarget
XM_020544937.1	ncRNA:22   CAGAGUUUAUAUGAUGUGGCAU   1   **||==||*||||||||||||| targets:1471   UCCUUGAACAUACUACACCGUA   1492 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100273520 (LOC100273520), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001147938.1	ncRNA:22   CAGAGUUUAUAUGAUGUGGCAU   1   **||==||*||||||||||||| targets:1342   UCCUUGAACAUACUACACCGUA   1363 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273520 (LOC100273520), mRNA	NA	coding protein	psRNATarget
BT041327.1	ncRNA:22   CAGAGUUUAUAUGAUGUGGCAU   1   **||==||*||||||||||||| targets:1342   UCCUUGAACAUACUACACCGUA   1363 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0205C13 mRNA, complete cds	NA	coding protein	psRNATarget
BT087468.1	ncRNA:22   CAGAGUUUAUAUGAUGUGGCAU   1   **||==||*||||||||||||| targets:1339   UCCUUGAACAUACUACACCGUA   1360 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0086J08 mRNA, complete cds	NA	coding protein	psRNATarget
BT038639.1	ncRNA:22   CAGAGUUUAUAUGAUGUGGCAU   1   **||==||*||||||||||||| targets:1288   UCCUUGAACAUACUACACCGUA   1309 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0303A18 mRNA, complete cds	NA	coding protein	psRNATarget