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BaseInfo

ncRNA ID novel_zma_miR6250
Species Zea mays
Class miRNA
Genome position Chr8:44986667-44986768 [+]
Reference genome RefGen_v4
Source SRR1583941;SRR1583942
Length 24
Mature sequence(if miRNA) 1 - GACGGAACCUCCCAAGUAAUCAGG - 24
Stem-loop(if miRNA) --                    C   GG         GGU     GA   AU
  GACGGAACCUCCCAAGUAAU AGG  CACCUACAG   UGUCU  UGU  G
  |||||||||||||||||||| |||  |||||||||   |||||  |||  U
  CUGCCUUGGAGGGUUCAUUA UCC  GUGGAUGUC   ACAGG  ACA  G
CA                    A   GG         --A     -A   GA
Stem-loop sequence GACGGAACCUCCCAAGUAAUCAGGGGCACCUACAGGGUUGUCUGAUGUAUGUGAGACAAGGACAACUGUAGGUGGGCCUAAUUACUUGGGAGGUUCCGUCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ237948.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:78   CCUAAUGACUUGGGAGGUUCCGUC   101

1.0 Sequence 3943 from Patent EP2985353 NA coding protein psRNATarget
HI405818.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:78   CCUAAUGACUUGGGAGGUUCCGUC   101

1.0 Sequence 3943 from Patent EP2074227 NA coding protein psRNATarget
LQ237943.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:78   CCUAAUGACUUGGGAGGUUCCGUC   101

1.0 Sequence 3938 from Patent EP2985353 NA coding protein psRNATarget
HI405813.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:78   CCUAAUGACUUGGGAGGUUCCGUC   101

1.0 Sequence 3938 from Patent EP2074227 NA coding protein psRNATarget
JB166274.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:78   CCUAAUGACUUGGGAGGUUCCGUC   101

1.0 Sequence 3938 from Patent EP2559767 NA coding protein psRNATarget
JB166279.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:78   CCUAAUGACUUGGGAGGUUCCGUC   101

1.0 Sequence 3943 from Patent EP2559767 NA coding protein psRNATarget
LQ238912.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:82   CCUAAUGACUUGGGAGGUUCCGUC   105

1.0 Sequence 4907 from Patent EP2985353 NA coding protein psRNATarget
JB167243.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:82   CCUAAUGACUUGGGAGGUUCCGUC   105

1.0 Sequence 4907 from Patent EP2559767 NA coding protein psRNATarget
HI406782.1
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:82   CCUAAUGACUUGGGAGGUUCCGUC   105

1.0 Sequence 4907 from Patent EP2074227 NA coding protein psRNATarget
BT084739.2
ncRNA:24   GGACUAAUGAACCCUCCAAGGCAG   1
  |||*||*|||||||||||||||||
targets:402   CCUAAUGACUUGGGAGGUUCCGUC   425

1.0 Zea mays full-length cDNA clone ZM_BFb0169H23 mRNA, complete cds NA coding protein psRNATarget