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BaseInfo

ncRNA ID osa-miRf10222-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - GCCGCCUCGACUCCUCUCUA - NA
Stem-loop(if miRNA)      A C                 AU     CUGG
CGAGC G CGCCUCGACUCCUCUCU  UCUAA    C
||||| | |||||||||||||||||  |||||    A
GCUCG C GUGGAGCUGAGGAGAGA  GGGUU    C
     C A                 --     AUUU
Stem-loop sequence CGAGCAGCCGCCUCGACUCCUCUCUAUUCUAACUGGCACUUUAUUGGGAGAGAGGAGUCGAGGUGACCGCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015782548.1
ncRNA:20   AUCUCUCCUCAGCUCCGCCG   1
  *||=|||||||||*||||||
targets:305   GAGGGAGGAGUCGCGGCGGC   324

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339166 (LOC4339166), transcript variant X1, mRNA uncharacterized LOC4339166(LOC4339166) coding protein psRNATarget
XM_015782549.1
ncRNA:20   AUCUCUCCUCAGCUCCGCCG   1
  *||=|||||||||*||||||
targets:310   GAGGGAGGAGUCGCGGCGGC   329

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339166 (LOC4339166), transcript variant X2, mRNA uncharacterized LOC4339166(LOC4339166) coding protein psRNATarget
XM_015782552.1
ncRNA:20   AUCUCUCCUCAGCUCCGCCG   1
  *||=|||||||||*||||||
targets:311   GAGGGAGGAGUCGCGGCGGC   330

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339166 (LOC4339166), transcript variant X5, mRNA uncharacterized LOC4339166(LOC4339166) coding protein psRNATarget
XM_015782550.1
ncRNA:20   AUCUCUCCUCAGCUCCGCCG   1
  *||=|||||||||*||||||
targets:312   GAGGGAGGAGUCGCGGCGGC   331

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339166 (LOC4339166), transcript variant X3, mRNA uncharacterized LOC4339166(LOC4339166) coding protein psRNATarget
XM_015782551.1
ncRNA:20   AUCUCUCCUCAGCUCCGCCG   1
  *||=|||||||||*||||||
targets:312   GAGGGAGGAGUCGCGGCGGC   331

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339166 (LOC4339166), transcript variant X4, mRNA uncharacterized LOC4339166(LOC4339166) coding protein psRNATarget
CT828812.1
ncRNA:20   AUCUCUCCUCAGCUCCGCCG   1
  *||=|||||||||*||||||
targets:283   GAGGGAGGAGUCGCGGCGGC   302

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA015J05, full insert sequence NA coding protein psRNATarget