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BaseInfo

ncRNA ID	novel_zma_miR6244
Species	Zea mays
Class	miRNA
Genome position	Chr5:73082001-73082120 [-]
Reference genome	RefGen_v4
Source	SRR2647385
Length	24
Mature sequence(if miRNA)	1 - UCCGGUUUUGUGGCUUCCAAACUA - 24
Stem-loop(if miRNA)	--A          UA         -    A  A  -UA         CU            A    UUUGGGAGUC  AAAACUGGA GAGA UU GA   GGCUAAAAU  CCUCCUUAUUCA A    ||||||||||  ||||||||| |||| || ||   |||||||||  ||||||||||||    AAACCUUCGG  UUUUGGCCU CUCU AA CU   CCGAUUUUA  GGAGGAAUAAGU A AUC          UG         U    -  -  UCC         AG            U
Stem-loop sequence	AUUUGGGAGUCUAAAAACUGGAGAGAAUUAGAUAGGCUAAAAUCUCCUCCUUAUUCAAAAUUGAAUAAGGAGGGAAUUUUAGCCCCUUCAAUCUCUUCCGGUUUUGUGGCUUCCAAACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001151652.1	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||||| targets:1202   UAGUUUGGGAGCCACAAAACCGGA   1225 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278349 (LOC100278349), mRNA	NA	coding protein	psRNATarget
EU973182.1	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||||| targets:1202   UAGUUUGGGAGCCACAAAACCGGA   1225 Target Full Sequence	1.0	Zea mays clone 394629 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544327.1	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=|||||=||||||||| targets:4529   UAGUUUGGGAGCCAUAAAACCGGA   4552 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance protein RGA3 (LOC103638075), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662350.2	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   |||||||*|||||||||||||||| targets:5204   UAGUUUGAAAGCCACAAAACCGGA   5227 Target Full Sequence	1.0	PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=|||||*||||||||| targets:137   UAGUUUGGGAGCCAGAAAACCGGA   160 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||*|| targets:603   UAGUUUGGGAGCCACAAAACCAGA   626 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||*|| targets:1483   UAGUUUGGGAGCCACAAAACCAGA   1506 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||*|| targets:1503   UAGUUUGGGAGCCACAAAACCAGA   1526 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||*|| targets:1527   UAGUUUGGGAGCCACAAAACCAGA   1550 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=||||||||||||*|| targets:1560   UAGUUUGGGAGCCACAAAACCAGA   1583 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537662.1	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||||||||=|||||||||||||*| targets:11594   UAGUUUGGGAGCCACAAAACCGAA   11617 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381565 (LOC100381565), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AUCAAACCUUCGGUGUUUUGGCCU   1   ||*||||||||||||||||||||* targets:1081   UACUUUGGAAGCCACAAAACCGGU   1104 Target Full Sequence	1.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget