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BaseInfo

ncRNA ID novel_zma_miR6240
Species Zea mays
Class miRNA
Genome position Chr5:102516708-102516772 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 42 - GGACUAGCUGGCUGGUGGGCUGCU - 65
Stem-loop(if miRNA) --   CUA  UG    -           --    A
  GGA   GC  GCUG GUGGGCUGCUC  GGCC C
  |||   ||  |||| |||||||||||  ||||
  CCU   CG  CGGC CACCCGGCGAG  CCGG C
UC   --C  GU    U           UU    A
Stem-loop sequence GGACUAGCUGGCUGGUGGGCUGCUCGGCCACCAGGCCUUGAGCGGCCCACUCGGCUGGCCUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001322952.1
ncRNA:24   UCGUCGGGUGGUCGGUCGAUCAGG   1
  ||||*||*|*|||||||||||||*
targets:360   AGCAACCAAGCAGCCAGCUAGUCA   383

3.0 Zea mays B3 domain-containing protein Os02g0683500-like (LOC103646035), mRNA NA coding protein psRNATarget