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BaseInfo

ncRNA ID	ath-miRf10070-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - ACUCGACCAGGGGGUCGAGUGG - NA
Stem-loop(if miRNA)	A         AGGG         --    G  - G G  AA      A GUGAUG UACUCGACC    GGUCGAGUA  ACUU GU A A UG  UGGCCG G |||||| |||||||||    |||||||||  |||| || | | ||  |||||| UACUGC GUGAGCUGG    CCAGCUCAU  UGAA CG U U GU  ACUGGU U       G         GGGA         AG    G  G G G  GG      G
Stem-loop sequence	GUGAUGAUACUCGACCAGGGGGUCGAGUAACUUGGUAGAGUGAAUGGCCGAGUGUGGUCAGGUGGUGUGGCGAAGUGAUACUCGACCAGGGGGUCGAGUGGCGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ069808.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||| targets:90   CCACUCGACCCCCUGGUCGAGU   111 Target Full Sequence	0.0	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||| targets:230   CCACUCGACCCCCUGGUCGAGU   251 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||||||||||| targets:181   CUACUCGACCCCCUGGUCGAGU   202 Target Full Sequence	0.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||| targets:124   CCACUCGACCCCCUGGUCGAGU   145 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||||||||||| targets:499   CCACUCGACCCCCUGGUCGAGU   520 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   =||||||||||||||||||||| targets:1571   UCACUCGACCCCCUGGUCGAGU   1592 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ==|||||||||||||||||||| targets:308   UUACUCGACCCCCUGGUCGAGU   329 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ==||||*||||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ==||||*||||||||||||||| targets:301   UUACUCAACCCCCUGGUCGAGU   322 Target Full Sequence	1.0	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ==||*||||||||||||||||| targets:583   UUACYCGACCCCCUGGUCGAGU   604 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
BT014714.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   *=|||||||||||*|||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   *=|||||||||||*|||||||| targets:136   AUACUCGACCCCCAGGUCGAGU   157 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |=|||||||||||*|||||||| targets:187   CUACUCGACCCCCAGGUCGAGU   208 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ||||||||||||*||||||||| targets:489   CCACUCGACCCCGUGGUCGAGU   510 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY231407.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ||||||||||||*||||||||| targets:535   CCACUCGACCCCAUGGUCGAGU   556 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   |||||||||||||*|||||||| targets:1104   CCACUCGACCCCCAGGUCGAGU   1125 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   ||||||||||||*||||||||| targets:1209   CCACUCGACCCCGUGGUCGAGU   1230 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT025674.1	ncRNA:22   GGUGAGCUGGGGGACCAGCUCA   1   *=|||=||||||||||||*||| targets:142   AUACUUGACCCCCUGGUCUAGU   163 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget