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BaseInfo

ncRNA ID novel_zma_miR6225
Species Zea mays
Class miRNA
Genome position Chr5:188702836-188702967 [+]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 1 - UCUCCAACAGAUCUCUUAAAGCAG - 24
Stem-loop(if miRNA) --          A           A  AA  ---UG    UGGGG     AA     -           A
  UCUCCAACAG UCUCUUAAAGC GC  UU     UUUC     AGCCC  AAAAC CCCUCAUUUGU G
  |||||||||| ||||||||||| ||  ||     ||||     |||||  ||||| |||||||||||
  AGAGGUUGUC AGGGGAUUUCG CG  GG     AAAG     UUGGG  UUUUG GGGAGUAAACA C
AC          A           -  GG  UUGAA    ---UA     AA     A           U
Stem-loop sequence UCUCCAACAGAUCUCUUAAAGCAGCAAUUUGUUUCUGGGGAGCCCAAAAAACCCCUCAUUUGUAGCUACAAAUGAGGGAGUUUUAAGGGUUAUGAAAAAGUUGGGGGCGCUUUAGGGGAACUGUUGGAGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050474.1
ncRNA:24   GACGAAAUUCUCUAGACAACCUCU   1
  ||||||||||=|||||||||||||
targets:340   CUGCUUUAAGGGAUCUGUUGGAGA   363

1.0 TSA: Zea mays contig51594, mRNA sequence NA coding protein psRNATarget
BT066766.1
ncRNA:24   GAC---GAAAUUCUCUAGACAACCUCU   1
  |||---|||||||=|||||||||||||
targets:51   CUGUCGCUUUAAGGGAUCUGUUGGAGA   77

1.0 Zea mays full-length cDNA clone ZM_BFb0066D22 mRNA, complete cds NA coding protein psRNATarget