ncRNA ID | novel_zma_miR6225 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:188702836-188702967 [+] |
Reference genome | RefGen_v4 |
Source | SRR2647385 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UCUCCAACAGAUCUCUUAAAGCAG - 24 |
Stem-loop(if miRNA) |
--          A           A  AA  ---UG    UGGGG     AA     -           A   UCUCCAACAG UCUCUUAAAGC GC  UU     UUUC     AGCCC  AAAAC CCCUCAUUUGU G   |||||||||| ||||||||||| ||  ||     ||||     |||||  ||||| |||||||||||   AGAGGUUGUC AGGGGAUUUCG CG  GG     AAAG     UUGGG  UUUUG GGGAGUAAACA C AC          A           -  GG  UUGAA    ---UA     AA     A           U |
Stem-loop sequence | UCUCCAACAGAUCUCUUAAAGCAGCAAUUUGUUUCUGGGGAGCCCAAAAAACCCCUCAUUUGUAGCUACAAAUGAGGGAGUUUUAAGGGUUAUGAAAAAGUUGGGGGCGCUUUAGGGGAACUGUUGGAGACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ050474.1 |
|
1.0 | TSA: Zea mays contig51594, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
BT066766.1 |
|
1.0 | Zea mays full-length cDNA clone ZM_BFb0066D22 mRNA, complete cds | NA | coding protein | psRNATarget |