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BaseInfo

ncRNA ID novel_zma_miR6214
Species Zea mays
Class miRNA
Genome position Chr4:16678937-16679076 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 117 - UAGGGUUUCCUGCCUAACGGCCGG - 140
Stem-loop(if miRNA) --       --    G  UA    CCGGAC     G GC           AU      C    G   AGG     - G
  UAGGGUU  UCCU CC  ACGG      GGUCC C  CCUGGGGGCGA  GGUCCA GCGU UGC   GGCGG C G
  |||||||  |||| ||  ||||      ||||| |  |||||||||||  |||||| |||| |||   ||||| |
  AUCCUAG  AGGA GG  UGCC      CCAGG G  GGGCCCUCGCU  CUAGGU CGCG GCG   UCGCU G A
GG       AG    G  GC    ------     - -A           --      C    -   --G     A A
Stem-loop sequence UAGGGUUUCCUGCCUAACGGCCGGACGGUCCGCGCCCUGGGGGCGAAUGGUCCACGCGUGUGCAGGGGCGGCGGAAGAUCGCUGGCGGCGCCUGGAUCUCGCUCCCGGGAGGGACCCCGUCGGGGAGGAGAGAUCCUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ073491.1
ncRNA:24   GGCCGGCAAUCCGUCCUUUGGGAU   1
  ||||*|||*||||||||||*||||
targets:36   CCGGACGUCAGGCAGGAAAACCUA   59

2.5 TSA: Zea mays contig09128, mRNA sequence NA coding protein psRNATarget