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BaseInfo

ncRNA ID novel_zma_miR6213
Species Zea mays
Class miRNA
Genome position Chr4:17226100-17226209 [-]
Reference genome RefGen_v4
Source SRR2647385
Length 24
Mature sequence(if miRNA) 87 - AUCGGUCUAUUCGGGUUUUCGGGU - 110
Stem-loop(if miRNA) ---A                  -C     C   UU   UU   AU  GUG       U
    UCGGUCUAUUCGGGUUUU  GGGUU GGG  CGG  CCU  AU   CUAUAUU C
    ||||||||||||||||||  ||||| |||  |||  |||  ||   |||||||
    AGCCAGAUAAGCCCAAAA  UCCAA CCU  GCC  GGG  UG   GGUAUGG G
AAUA                  UU     U   UG   -U   CU  ---       G
Stem-loop sequence AUCGGUCUAUUCGGGUUUUCGGGUUCGGGUUCGGUUCCUAUAUGUGCUAUAUUUCGGGGUAUGGGUUCGGGUCCGGUUCCUAACCUUUAAAACCCGAAUAGACCGAAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008650156.2
ncRNA:24   UGGGCUUUUGGGCUUAUCUGGCUA   1
  *|*=|||=|*|||||||||||||*
targets:559   UCGUGAAGAACCGAAUAGACCGAA   582

3.0 PREDICTED: Zea mays GDSL esterase/lipase At1g71691-like (LOC103628962), mRNA NA coding protein psRNATarget